PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00130974001 | ||||||||
Common Name | GSBRNA2T00130974001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bZIP | ||||||||
Protein Properties | Length: 271aa MW: 30622.6 Da PI: 10.2365 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.6 | 1.5e-09 | 193 | 254 | 5 | 58 |
CHHHCHHHHHHHHHHHHHHHHH........HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKka........eieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r +r++kNRe+A rsR+RK++ ++ eLe +v+ L+aeN +L+ + ++lk +a+ GSBRNA2T00130974001 193 RRHKRMIKNRESAARSRARKQEwfdyhlqaYTNELELEVAHLQAENAKLRRQQDQLKMAAAN 254 699*****************74333333339*************************988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.880.10 | 4.0E-4 | 169 | 204 | IPR008917 | Transcription factor, Skn-1-like, DNA-binding domain |
SMART | SM00338 | 2.1E-9 | 185 | 254 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.6E-7 | 193 | 251 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 1.17E-23 | 193 | 255 | No hit | No description |
SuperFamily | SSF57959 | 2.81E-7 | 193 | 249 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 196 | 211 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 4.9E-10 | 205 | 250 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MMSSARHQRN HRISATNKNK ILNTVSSISS SSSPLHSSQD SQEAQKSSLV TMEEVWEDIN 60 FASIHHLNRH SQHPPDNHQP RFRSHNHQNQ NPNSIFQNFL SRPSNQEPTI HTSLNGDTTT 120 VFSSSPLAPP ATVLSLNSGA GFEFLDNQDP LATSNLHSHN HLTDVPSFNT SLEDFTCFGK 180 KRGQESNEGS GNRRHKRMIK NRESAARSRA RKQEWFDYHL QAYTNELELE VAHLQAENAK 240 LRRQQDQLKM AAANQQPKKK TLQRSSTSPF * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in shoot apex. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980, ECO:0000269|PubMed:25661797}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:16099979, ECO:0000269|PubMed:16099980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00130974001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189569 | 0.0 | AC189569.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009I12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013588616.1 | 1e-180 | PREDICTED: protein FD-like | ||||
Swissprot | Q84JK2 | 1e-123 | FD_ARATH; Protein FD | ||||
TrEMBL | A0A3P6F712 | 1e-160 | A0A3P6F712_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g006110.1 | 1e-160 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35900.1 | 1e-124 | bZIP family protein |