PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00130941001

Common Name

GSBRNA2T00130941001, LOC106354258

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 258aa MW: 27690.8 Da PI: 5.1854

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00130941001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00018	138	159	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg+ F ++ H+r+H GSBRNA2T00130941001 138 VCNVCGRAFHSWKAVFGHLRSH 159 6*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.663	137	164	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MTNPEKMKVD GDTEKEREDS SSDEQWSDEE SAMREIVLGL PALSISSATF GVSIADDEEE 60 EARLNEQAVV AAELVIAAAE EAVMKEKSDG KKKVRRQRKT MKLNNDDEAG GSSKGGEAAK 120 KPRKKTSEFT NLPRGPPVCN VCGRAFHSWK AVFGHLRSHK DRSYRGFLPP PRFAAPIRGV 180 MIPGPNSAFV RVVARGGSSG GGGGASGGEG GRGVGIVMDV DRVEEEKQEV TESGSVAKFD 240 LNKSPPKDDD EEEEKTK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00130941001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013592252.1	0.0	PREDICTED: zinc finger protein ZAT9
Refseq	XP_013649612.2	0.0	uncharacterized protein LOC106354258
TrEMBL	A0A0D3A1Q6	0.0	A0A0D3A1Q6_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6ESB1	0.0	A0A3P6ESB1_BRAOL; Uncharacterized protein
STRING	Bo1g006320.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5875	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35610.1	6e-40	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	106354258

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]