PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00130939001
Common NameGSBRNA2T00130939001, LOC106370412
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 327aa    MW: 37764.5 Da    PI: 9.9066
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00130939001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK81.39.6e-26197245452
               RWP-RK   4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           + ledlskyF  pi +A+++L+v+lTvLK++CR++GI+RWPhRkiksl
  GSBRNA2T00130939001 197 GLCLEDLSKYFGVPIVEASRKLNVGLTVLKKKCREFGIPRWPHRKIKSL 245
                          5779*******************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.803180265IPR003035RWP-RK domain
PfamPF020421.1E-21198245IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAHSLTSLAI FQGVNHKEMI RSLHVYGSVE IEREFLFERK GRYVEKKAKP LFCSEGLQRA  60
EISLGLVFGT WRCIFVFRSN HSLPQFPTLL CPSRNPKLVD IPNLANVLKF ISELKPKKPC  120
FDEHKLLDLV FKEDRVGDGE VDQAKPERFA LKQDLNCLPD SETESEKSED DQTEQSESDV  180
RTEIFKKRRT PSQHVAGLCL EDLSKYFGVP IVEASRKLNV GLTVLKKKCR EFGIPRWPHR  240
KIKSLDSLIH DLQEEAEKQQ EKNKAAAMVV AKKQKKLERE MRNIVERPFM EIQIETKRFR  300
QDNFKKRHRA SRAKKNQESL ATSSST*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00130939001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0311357e-72AL031135.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F8D20 (ESSAII project).
GenBankAL1615877e-72AL161587.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83.
GenBankCP0026877e-72CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013589101.10.0PREDICTED: protein RKD5
RefseqXP_013665877.10.0protein RKD5
SwissprotO817911e-165RKD5_ARATH; Protein RKD5
TrEMBLA0A0D3A1Q80.0A0A0D3A1Q8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FQR50.0A0A3P6FQR5_BRAOL; Uncharacterized protein (Fragment)
STRINGBo1g006340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM120492429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35590.11e-134RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]