PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSBRNA2T00130911001 | ||||||||
Common Name | GSBRNA2T00130911001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 967aa MW: 107185 Da PI: 6.2297 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 90.8 | 1.1e-28 | 640 | 690 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ GSBRNA2T00130911001 640 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 690 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.041 | 629 | 710 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-24 | 643 | 690 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.24E-23 | 858 | 950 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 1.2E-22 | 861 | 947 | No hit | No description |
SMART | SM00666 | 5.5E-27 | 863 | 948 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 28.666 | 863 | 948 | IPR000270 | PB1 domain |
Pfam | PF00564 | 3.0E-18 | 865 | 947 | IPR000270 | PB1 domain |
CDD | cd06407 | 3.99E-40 | 865 | 947 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 967 aa Download sequence Send to blast |
MEGSGGGDGG FLPNPSFGAF PETAMDMDFM EELFFDGCWL ETTDGKSLKQ TSGHQAPSST 60 NMNDNNNNNS FLYGYQFAEN PSQDHISNED TGRKLPPGFL KMEDLTNQPM TQVSFDQSAA 120 MSSAQAEKFL LEETERGRRY WIAPRTSQGP SSSVKDRLFQ AINGLKVQDK DFLIQIWVPI 180 QQEGKNFLTT LEQPHFFNPK YKSLKRYRDV SVSYNFLADE DSKESVGLPG RVFLGKLPEW 240 TPDVRFFRSE EYPRIKEAQR CDVRGSLALP VFESGSGICL GVVEIVTTTQ KMNYRPELEN 300 ICKALEAVNL RSSANMESPS SEFLQVYKQF YCAVIPEVSV FLTSVCRSYD LPLALTWAPC 360 ARQGRGGSRH SDENFSECVS TLDSACFVLD QQSHNFQEAC SEHHLLQGEG IVGKAFKATK 420 LFFVPEVTTF SKTNYPLAHH AKISGLHAAL AVPLKNKFNG SVEFVLEFFF PKSCLDTEAQ 480 QEMLKSLSVT LQQDFRSLNL VIDKELELEV VFPVREELLF SGNAETGESL KPSPLEEISQ 540 EDSSWISHMI NANEKGKGVS LSWEYQKEEP KEEFMLTSGW DNNNNQIGSF LSDAEQFQKA 600 SNSGGLRLDI DPSFDSASFG VGQTLLGSRR PGEKRRTKTE KTIGLEVLRQ YFAGSLKDAA 660 KSIGVCPTTL KRICRQHGIT RWPSRKIKKV GHSLKKLQLV IDSVQGVQGS IQLDSFYTSF 720 PELSSPNNVS STGTGTSFRN NDQPSHLNPQ TENGVSPAVA PTSSPPSSSC SHSSGSSTCC 780 STGANQSTNT ANTSNTISTL MADNAGAILK RARSEVRLRT VNQEETKSLS RTLSHRAFSE 840 HPLLNNLPRL PESRSRSLKA GGASKVKATF GEAKVRFTLL PTWGFRELQH EIARRFNIDN 900 NIIATFDLKY LDDDKEWVLL TCEADLEECI DIYRSSQSRT IKISVHEASQ AKLGGSFGST 960 GPVPLL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GSBRNA2T00130911001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC189656 | 0.0 | AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013604758.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Refseq | XP_013604767.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Refseq | XP_013604775.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Refseq | XP_013670582.1 | 0.0 | protein NLP2-like | ||||
Swissprot | Q7X9B9 | 0.0 | NLP2_ARATH; Protein NLP2 | ||||
TrEMBL | A0A3P6FQV0 | 0.0 | A0A3P6FQV0_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g006600.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1998 | 27 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35270.1 | 0.0 | Nin-like family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|