PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00130911001

Common Name

GSBRNA2T00130911001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 967aa MW: 107185 Da PI: 6.2297

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00130911001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1.1e-28	640	690	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+i le+l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ GSBRNA2T00130911001 640 EKTIGLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 690 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.041	629	710	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-24	643	690	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.24E-23	858	950	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.2E-22	861	947	No hit	No description
SMART	SM00666	5.5E-27	863	948	IPR000270	PB1 domain
PROSITE profile	PS51745	28.666	863	948	IPR000270	PB1 domain
Pfam	PF00564	3.0E-18	865	947	IPR000270	PB1 domain
CDD	cd06407	3.99E-40	865	947	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence Send to blast
MEGSGGGDGG FLPNPSFGAF PETAMDMDFM EELFFDGCWL ETTDGKSLKQ TSGHQAPSST 60 NMNDNNNNNS FLYGYQFAEN PSQDHISNED TGRKLPPGFL KMEDLTNQPM TQVSFDQSAA 120 MSSAQAEKFL LEETERGRRY WIAPRTSQGP SSSVKDRLFQ AINGLKVQDK DFLIQIWVPI 180 QQEGKNFLTT LEQPHFFNPK YKSLKRYRDV SVSYNFLADE DSKESVGLPG RVFLGKLPEW 240 TPDVRFFRSE EYPRIKEAQR CDVRGSLALP VFESGSGICL GVVEIVTTTQ KMNYRPELEN 300 ICKALEAVNL RSSANMESPS SEFLQVYKQF YCAVIPEVSV FLTSVCRSYD LPLALTWAPC 360 ARQGRGGSRH SDENFSECVS TLDSACFVLD QQSHNFQEAC SEHHLLQGEG IVGKAFKATK 420 LFFVPEVTTF SKTNYPLAHH AKISGLHAAL AVPLKNKFNG SVEFVLEFFF PKSCLDTEAQ 480 QEMLKSLSVT LQQDFRSLNL VIDKELELEV VFPVREELLF SGNAETGESL KPSPLEEISQ 540 EDSSWISHMI NANEKGKGVS LSWEYQKEEP KEEFMLTSGW DNNNNQIGSF LSDAEQFQKA 600 SNSGGLRLDI DPSFDSASFG VGQTLLGSRR PGEKRRTKTE KTIGLEVLRQ YFAGSLKDAA 660 KSIGVCPTTL KRICRQHGIT RWPSRKIKKV GHSLKKLQLV IDSVQGVQGS IQLDSFYTSF 720 PELSSPNNVS STGTGTSFRN NDQPSHLNPQ TENGVSPAVA PTSSPPSSSC SHSSGSSTCC 780 STGANQSTNT ANTSNTISTL MADNAGAILK RARSEVRLRT VNQEETKSLS RTLSHRAFSE 840 HPLLNNLPRL PESRSRSLKA GGASKVKATF GEAKVRFTLL PTWGFRELQH EIARRFNIDN 900 NIIATFDLKY LDDDKEWVLL TCEADLEECI DIYRSSQSRT IKISVHEASQ AKLGGSFGST 960 GPVPLL*

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence Send to blast

MEGSGGGDGG FLPNPSFGAF PETAMDMDFM EELFFDGCWL ETTDGKSLKQ TSGHQAPSST  60
NMNDNNNNNS FLYGYQFAEN PSQDHISNED TGRKLPPGFL KMEDLTNQPM TQVSFDQSAA  120
MSSAQAEKFL LEETERGRRY WIAPRTSQGP SSSVKDRLFQ AINGLKVQDK DFLIQIWVPI  180
QQEGKNFLTT LEQPHFFNPK YKSLKRYRDV SVSYNFLADE DSKESVGLPG RVFLGKLPEW  240
TPDVRFFRSE EYPRIKEAQR CDVRGSLALP VFESGSGICL GVVEIVTTTQ KMNYRPELEN  300
ICKALEAVNL RSSANMESPS SEFLQVYKQF YCAVIPEVSV FLTSVCRSYD LPLALTWAPC  360
ARQGRGGSRH SDENFSECVS TLDSACFVLD QQSHNFQEAC SEHHLLQGEG IVGKAFKATK  420
LFFVPEVTTF SKTNYPLAHH AKISGLHAAL AVPLKNKFNG SVEFVLEFFF PKSCLDTEAQ  480
QEMLKSLSVT LQQDFRSLNL VIDKELELEV VFPVREELLF SGNAETGESL KPSPLEEISQ  540
EDSSWISHMI NANEKGKGVS LSWEYQKEEP KEEFMLTSGW DNNNNQIGSF LSDAEQFQKA  600
SNSGGLRLDI DPSFDSASFG VGQTLLGSRR PGEKRRTKTE KTIGLEVLRQ YFAGSLKDAA  660
KSIGVCPTTL KRICRQHGIT RWPSRKIKKV GHSLKKLQLV IDSVQGVQGS IQLDSFYTSF  720
PELSSPNNVS STGTGTSFRN NDQPSHLNPQ TENGVSPAVA PTSSPPSSSC SHSSGSSTCC  780
STGANQSTNT ANTSNTISTL MADNAGAILK RARSEVRLRT VNQEETKSLS RTLSHRAFSE  840
HPLLNNLPRL PESRSRSLKA GGASKVKATF GEAKVRFTLL PTWGFRELQH EIARRFNIDN  900
NIIATFDLKY LDDDKEWVLL TCEADLEECI DIYRSSQSRT IKISVHEASQ AKLGGSFGST  960
GPVPLL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00130911001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189656	0.0	AC189656.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrS015K01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013604758.1	0.0	PREDICTED: protein NLP2
Refseq	XP_013604767.1	0.0	PREDICTED: protein NLP2
Refseq	XP_013604775.1	0.0	PREDICTED: protein NLP2
Refseq	XP_013670582.1	0.0	protein NLP2-like
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A3P6FQV0	0.0	A0A3P6FQV0_BRAOL; Uncharacterized protein
STRING	Bo1g006600.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]