PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00130775001

Common Name

GSBRNA2T00130775001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 351aa MW: 39043.3 Da PI: 9.8733

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00130775001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46.8	6.3e-15	272	323	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+ + +e ++k+ GSBRNA2T00130775001 272 RRQKRMIKNRESAARSRARKQAYTLELEAEVAQLKEQNEELQRKqVEIMEKQ 323 69*************************************9975404444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.4E-14	268	333	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.921	270	315	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.25E-10	272	323	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.6E-14	272	327	No hit	No description
Pfam	PF00170	8.1E-13	272	328	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.28E-25	272	326	No hit	No description
PROSITE pattern	PS00036	0	275	290	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MGSRFNFVDD AKQPALGTGV PLTRQNSVFS LTFDEFQNSW GGGVGKDFGS MNMDELLKNI 60 WTAEESHSIM ANNTREIGVG GGLQRQGSIT LPRTISQKRV DDVWKELMKD DDAGSGGGGA 120 SGVPQRQQTL GEMTLEEFLA RAGVVREEPQ QQVESVHQPQ QLIQKQQDVA FPKQSTIAFS 180 NTVDLVNRSQ PPTQEVKPSV LGVRDMPMNN NNLLQAVDFK TGVTVAAVSP GSQMSPDLTP 240 KSNMDASLSP VPYMFAGRVR KTGAVLEKVI ERRQKRMIKN RESAARSRAR KQAYTLELEA 300 EVAQLKEQNE ELQRKQVEIM EKQKKQLLEP MRQTWGCKRQ CLRRTLTGPW *

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MGSRFNFVDD AKQPALGTGV PLTRQNSVFS LTFDEFQNSW GGGVGKDFGS MNMDELLKNI  60
WTAEESHSIM ANNTREIGVG GGLQRQGSIT LPRTISQKRV DDVWKELMKD DDAGSGGGGA  120
SGVPQRQQTL GEMTLEEFLA RAGVVREEPQ QQVESVHQPQ QLIQKQQDVA FPKQSTIAFS  180
NTVDLVNRSQ PPTQEVKPSV LGVRDMPMNN NNLLQAVDFK TGVTVAAVSP GSQMSPDLTP  240
KSNMDASLSP VPYMFAGRVR KTGAVLEKVI ERRQKRMIKN RESAARSRAR KQAYTLELEA  300
EVAQLKEQNE ELQRKQVEIM EKQKKQLLEP MRQTWGCKRQ CLRRTLTGPW *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14256	1e-168	flower\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269\|PubMed:11884679}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00130775001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:16284313}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353408	1e-179	AK353408.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-30-J01.
GenBank	JQ971973	1e-179	JQ971973.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 3 (ABF3) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013653974.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 6
Swissprot	Q9M7Q3	0.0	AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBL	A0A078JS33	0.0	A0A078JS33_BRANA; BnaAnng26550D protein
STRING	XP_006412286.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34000.2	1e-107	abscisic acid responsive elements-binding factor 3

Publications ? help Back to Top
Zhao Q, et al. Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling. Mol. Biol. Rep., 2018. [PMID:24078097] Bao Y, et al. The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis. New Phytol., 2014. 202(1): p. 174-87 [PMID:24350984] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Xie M, et al. AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis. Plant Physiol. Biochem., 2014. 77: p. 73-83 [PMID:24561249] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Kim EY,Seo YS,Park KY,Kim SJ,Kim WT Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants. Gene, 2014. 552(1): p. 146-54 [PMID:25234727] Zhang H, et al. The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis. Plant Cell, 2015. 27(1): p. 214-27 [PMID:25616872] Baek D, et al. A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. Mol. Cells, 2016. 39(2): p. 111-8 [PMID:26674968] Bao Y, et al. Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis. PLoS ONE, 2016. 11(2): p. e0148572 [PMID:26849212] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Li X, et al. Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis. Front Plant Sci, 2016. 7: p. 1075 [PMID:27486475] Wang Z, et al. Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa. Plant Physiol. Biochem., 2016. 109: p. 199-208 [PMID:27721135] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Kerr TCC, et al. Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum). Plant Cell Environ., 2018. 41(5): p. 898-907 [PMID:28098349] Lyzenga WJ,Sullivan V,Liu H,Stone SL The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG). Front Plant Sci, 2017. 8: p. 502 [PMID:28443108] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Kim HJ, et al. Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean. Mol. Cells, 2018. 41(5): p. 413-422 [PMID:29754472]