PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00130531001 | ||||||||
Common Name | GSBRNA2T00130531001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TALE | ||||||||
Protein Properties | Length: 375aa MW: 41858 Da PI: 6.3956 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.1 | 1.3e-07 | 322 | 355 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + GSBRNA2T00130531001 322 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 355 579*****************************87 PP | |||||||
2 | ELK | 26.9 | 1.1e-09 | 276 | 297 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++++++++++++E++ GSBRNA2T00130531001 276 ELKHELKQGFKEKIVDIREEIM 297 9********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 5.4E-18 | 111 | 155 | IPR005540 | KNOX1 |
Pfam | PF03790 | 9.4E-17 | 113 | 154 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.4E-25 | 162 | 217 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.8E-19 | 167 | 216 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.446 | 276 | 296 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.8E-6 | 276 | 297 | IPR005539 | ELK domain |
SMART | SM01188 | 6.2E-4 | 276 | 297 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.985 | 296 | 359 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.03E-15 | 298 | 362 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.5E-10 | 298 | 363 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.97E-11 | 299 | 358 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-24 | 303 | 359 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.8E-17 | 316 | 355 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009727 | Biological Process | detection of ethylene stimulus | ||||
GO:0071369 | Biological Process | cellular response to ethylene stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MSFTSSHLLP PQEDLPLRHF SDQSHQQPQP HFSETPSLLT ASFLNLPPAA ATADSDFAPP 60 NRGGDSSSAA ATNRRWLSFD SSEIQNTGEG RPEVIDGVNA ADGGGGDWKN ASCKAAIVRH 120 PMFEQLLAAH VACLRVATPV DQIPRIDAQL GELHTVAAKY STLGVVMDNK ELDHFMSHYV 180 VLLCSFKEQL QHHVCVHAME AITACWEIEQ SLQSITGVSP SENNGKTMSD DEDDNQVESE 240 VNMFDGSLEG SDCMMGFGPL VPTERERSLL ERVKKELKHE LKQGFKEKIV DIREEIMRKR 300 RAGKLPGDTT SVLKEWWRTH AKWPYPTEED KAKLVQETGL QLKQINNWFI NQRKRNWNSS 360 SSTSSTPSKN KRKR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 352 | 373 | RKRNWNSSSSTSSTPSKNKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.14079 | 0.0 | flower| seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00130531001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352580 | 0.0 | AK352580.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-04-I15. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013596917.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 5 | ||||
Swissprot | P48002 | 0.0 | KNAT5_ARATH; Homeobox protein knotted-1-like 5 | ||||
TrEMBL | A0A0D3A2Q0 | 0.0 | A0A0D3A2Q0_BRAOL; Uncharacterized protein | ||||
TrEMBL | U6JT45 | 0.0 | U6JT45_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g010750.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32040.1 | 0.0 | KNOTTED1-like homeobox gene 5 |
Publications ? help Back to Top | |||
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