PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00130479001
Common NameGSBRNA2T00130479001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 384aa    MW: 44000.7 Da    PI: 10.4962
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00130479001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.85.6e-20211011098
                          HHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           ++s+ l +p kf+++h +g k+e+kt++l++ +s r+W+vk+  ++++    lt+GWkeF+ka++L++gD+v+F+ +g++ f  +v++f
  GSBRNA2T00130479001  21 GFQSH-LKIPVKFFSKHiEG-KHEGKTVKLRSdSSDRTWKVKM--EGHR----LTEGWKEFAKAHDLRVGDVVIFRQEGDMLF--HVTAF 100
                          45555.9**********644.56789*****96777*******..6666....***********************7777777..77777 PP

                          - CS
                   B3  98 r 98 
                           
  GSBRNA2T00130479001 101 G 101
                          5 PP
2B345.31.5e-14143232497
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          +++++ +l++g lv++ + ++    +k +  +++l++++g+sWe ++  +k+sg++++ + W+ F+ a +L++gD++ Fkl + +++++v
  GSBRNA2T00130479001 143 QTVTAGSLSNG-LVVSYSRCAFRFRNKGR-HKVVLMNQEGESWESEV-KCKRSGQVFICRSWRIFCTASRLEVGDSLQFKLLQ-NTETPV 228
                          56677777777.99999999666666555.59***************.588888999999********************998.555578 PP

                          EEEE CS
                   B3  94 vkvf 97 
                          +++ 
  GSBRNA2T00130479001 229 FQLS 232
                          8765 PP
3B351.81.5e-16264360299
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ++++ ++++l+ g  +lp +f+++++++   + +++l d++  +W++kl+ + +sg+  ++ +kGWk+F+ an++ +g++++++l++r +
  GSBRNA2T00130479001 264 VTITPSASNLEIGKQYLPVHFTRANKLNR--PGKIVLVDKNKVEWSMKLKKDIRSGTmyIINGKGWKRFCAANKVVAGESLTLELIRR-G 350
                          555556677888999***********995..558***************99777777534446**********************995.5 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          + +++k+f+k
  GSBRNA2T00130479001 351 RIPLLKFFSK 360
                          5578888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-267105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-249108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.02911103IPR003340B3 DNA binding domain
CDDcd100171.42E-1912100No hitNo description
SMARTSM010191.0E-2514103IPR003340B3 DNA binding domain
PfamPF023622.6E-142395IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-15133231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-14134231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-9140231No hitNo description
SMARTSM010192.4E-12141235IPR003340B3 DNA binding domain
PfamPF023623.6E-13142232IPR003340B3 DNA binding domain
PROSITE profilePS5086310.56172234IPR003340B3 DNA binding domain
CDDcd100171.09E-16261359No hitNo description
Gene3DG3DSA:2.40.330.105.5E-17262358IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.9E-27263361IPR003340B3 DNA binding domain
SuperFamilySSF1019361.92E-17263363IPR015300DNA-binding pseudobarrel domain
PfamPF023627.7E-16263360IPR003340B3 DNA binding domain
PROSITE profilePS5086313.592263360IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MENASLFSPA NPHFFQPLLT GFQSHLKIPV KFFSKHIEGK HEGKTVKLRS DSSDRTWKVK  60
MEGHRLTEGW KEFAKAHDLR VGDVVIFRQE GDMLFHVTAF GTSCCELQYV LSGRHDVKEE  120
GDVIGESSRR EKESSPSLTC FNQTVTAGSL SNGLVVSYSR CAFRFRNKGR HKVVLMNQEG  180
ESWESEVKCK RSGQVFICRS WRIFCTASRL EVGDSLQFKL LQNTETPVFQ LSSHLKVKRE  240
KGTLPEEEEE EDNVVDKTKK PRFVTITPSA SNLEIGKQYL PVHFTRANKL NRPGKIVLVD  300
KNKVEWSMKL KKDIRSGTMY IINGKGWKRF CAANKVVAGE SLTLELIRRG RIPLLKFFSK  360
MEQPPFKTKT RERKRTRVQR LSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00130479001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892171e-105AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013587747.10.0PREDICTED: B3 domain-containing protein REM8-like
SwissprotQ8H2D11e-142REM8_ARATH; B3 domain-containing protein REM8
TrEMBLA0A3P6F7030.0A0A3P6F703_BRAOL; Uncharacterized protein
STRINGBo1g011080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-137B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]