PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00130478001
Common NameGSBRNA2T00130478001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 410aa    MW: 46282 Da    PI: 10.243
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00130478001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.7e-18221011198
                          HHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3  11 lksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                          ++s+ l +p +f+++h +g k+e+kt+ l++ +s r+W+vk+  ++++    lt+GWkeF+ka++L+  D+v+F+ +g++ f  +v++f 
  GSBRNA2T00130478001  22 FQSH-LNIPVTFFSKHiEG-KHEGKTVELRSdSSDRTWKVKM--EGHR----LTDGWKEFAKAHDLRIYDVVIFRQEGDMLF--HVTAFG 101
                          5555.99*********644.56788****996777*******..6666....***********************7777777..777775 PP
2B361.41.5e-19142235298
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          f++ +++++l++g + +p +fa+++g++k + + + l++++g+sWe kl+ + +sg++++ ++W++F+ a +Lk gD++ Fkl + ++++
  GSBRNA2T00130478001 142 FSQYVTASNLSRGAVGVPLDFARRNGLNKGR-RVIALRNQEGKSWESKLK-STRSGQVFICRNWRSFCTASKLKIGDSFQFKLLE-NTET 228
                          6788999*********************866.69***************5.55556788899********************988.6666 PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                          +v+++++
  GSBRNA2T00130478001 229 PVFQLCS 235
                          9999997 PP
3B353.54.3e-17263360199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 
                          f+k++t++++l+ g   +p +f+++++++k++  +++l d++  +W++kl+ + +sg+  ++ ++ Wk+F+ an++ +g++++++l++r+
  GSBRNA2T00130478001 263 FVKITTTASSLEIGKQNIPVHFTRANKLNKPG--KIVLVDKDKVEWSMKLNQDSRSGTmyIMGGTAWKSFCAANEVVVGESLTLELIRRE 350
                          89***************************776..7***************7755555554444588*********************965 PP

                          EE..EEEEE-S CS
                   B3  89 efelvvkvfrk 99 
                          +  l++k+++k
  GSBRNA2T00130478001 351 RI-LLLKFCSK 360
                          44.78888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.2E-248105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-229109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.77411103IPR003340B3 DNA binding domain
CDDcd100174.91E-1712100No hitNo description
SMARTSM010196.1E-2414103IPR003340B3 DNA binding domain
PfamPF023626.9E-122497IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-20134234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-19137234IPR015300DNA-binding pseudobarrel domain
SMARTSM010195.5E-25141237IPR003340B3 DNA binding domain
CDDcd100173.20E-15141235No hitNo description
PROSITE profilePS5086313.733141237IPR003340B3 DNA binding domain
PfamPF023623.5E-19142235IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-17257360IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-16258364IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-17261359No hitNo description
SMARTSM010192.2E-24263361IPR003340B3 DNA binding domain
PfamPF023623.5E-16263360IPR003340B3 DNA binding domain
PROSITE profilePS5086313.338263361IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEKASLLTPA NPHFFQPLLT GFQSHLNIPV TFFSKHIEGK HEGKTVELRS DSSDRTWKVK  60
MEGHRLTDGW KEFAKAHDLR IYDVVIFRQE GDMLFHVTAF GTSCCEIQYA PSGIHVKVKE  120
ESEEIGESSR REKESSSKPT CFSQYVTASN LSRGAVGVPL DFARRNGLNK GRRVIALRNQ  180
EGKSWESKLK STRSGQVFIC RNWRSFCTAS KLKIGDSFQF KLLENTETPV FQLCSLSKVK  240
RKKETLSESE EDNVVDKTET PRFVKITTTA SSLEIGKQNI PVHFTRANKL NKPGKIVLVD  300
KDKVEWSMKL NQDSRSGTMY IMGGTAWKSF CAANEVVVGE SLTLELIRRE RILLLKFCSK  360
MEQPPFKTKA RERKRARAKS SSIQGFESES IVSTLSTSVQ HSEGLGKVR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00130478001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892170.0AC189217.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010F06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022552218.10.0B3 domain-containing protein REM8-like
SwissprotQ8H2D11e-149REM8_ARATH; B3 domain-containing protein REM8
TrEMBLA0A3P6F7030.0A0A3P6F703_BRAOL; Uncharacterized protein
STRINGBo1g011080.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31680.11e-137B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]