PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00130264001 | ||||||||
Common Name | GSBRNA2T00130264001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ARF | ||||||||
Protein Properties | Length: 618aa MW: 68183.5 Da PI: 7.7546 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78 | 1e-24 | 118 | 219 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f k+lt+sd+++ g +++p+ +ae + +++ + t+ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF+ GSBRNA2T00130264001 118 FAKTLTQSDANNGGGFSVPRYCAEMIfprldynAEPPVQ--TILAKDVHGEVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFM 205 89*********************999****985444444..8999********************************************* PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 + +++ l+v+++r+ GSBRNA2T00130264001 206 --RAENGDLCVGIRRA 219 ..4488999****997 PP | |||||||
2 | Auxin_resp | 111.9 | 6.3e-37 | 242 | 325 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a ++ +FevvY+Pras+seF+vk+ + ++a++++++ GmRfkmafetedss++++ +Gtv++vs +dpvrWpnS+Wr+L+ GSBRNA2T00130264001 242 AASLAISGRAFEVVYYPRASSSEFCVKALDARAAMRIPWCSGMRFKMAFETEDSSRISWfMGTVSAVSVSDPVRWPNSPWRLLQ 325 567788999*************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.3E-39 | 109 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-30 | 113 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-22 | 116 | 218 | No hit | No description |
SMART | SM01019 | 1.6E-23 | 118 | 220 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.394 | 118 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-22 | 118 | 219 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.4E-31 | 242 | 325 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 16.197 | 531 | 611 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 618 aa Download sequence Send to blast |
MINVMNPMRS GSEKGLDPQL WHACGGGMVR MPPMNSKVFY FPQGHAENAY DHVDFKNLPI 60 PPMVLCRVLA IKYMADPESD EVFAKLKLIP LKDNDHEYRE GEDSNGLESN NSEKTPSFAK 120 TLTQSDANNG GGFSVPRYCA EMIFPRLDYN AEPPVQTILA KDVHGEVWKF RHIYRGTPRR 180 HLLTTGWSNF VNQKKLVAGD SIVFMRAENG DLCVGIRRAK RGGIGNNGVE KGKVTAESVV 240 EAASLAISGR AFEVVYYPRA SSSEFCVKAL DARAAMRIPW CSGMRFKMAF ETEDSSRISW 300 FMGTVSAVSV SDPVRWPNSP WRLLQVAWDE PDLLQNVKRV NPWLVELVSN VHPIVPSFSP 360 PRKKMRLPQH SDYNARISVP SFASNPLIRS SPLSSVLDNV PVGLQGARHN AHQYYGLSSS 420 DLHHYYLNRP HPPPPPPTLT VPPPLGFRNI DSKNEKGFCF LTMGTTPCND TESKKSHIVL 480 FGKLILPEEQ KGSEKTQISS GGSNQNCVGG SSSDEGSPCS NKAHDGLGLE TGHCKVFMES 540 DDVGRTLDLS VLGSYEELGV KLSDMFGIQK SEMLSSVLYR DASGAVKYPG NEPFSEFLKT 600 ARRLTILSEQ GSESVVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-80 | 9 | 346 | 43 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.16846 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00130264001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN979477 | 0.0 | JN979477.1 Brassica rapa subsp. pekinensis auxin response factor 16-1 (ARF16-1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009128129.1 | 0.0 | PREDICTED: auxin response factor 16 | ||||
Swissprot | Q93YR9 | 0.0 | ARFP_ARATH; Auxin response factor 16 | ||||
TrEMBL | A0A398AJP5 | 0.0 | A0A398AJP5_BRACM; Auxin response factor | ||||
STRING | Bra011162.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |