PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00130028001
Common NameGSBRNA2T00130028001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 302aa    MW: 34671.5 Da    PI: 6.7005
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00130028001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.7e-18112164456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          + +++ eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ +WFqNrRa++k
  GSBRNA2T00130028001 112 KKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWK 164
                          4568889*********************************************9 PP
2HD-ZIP_I/II1314.6e-42110201192
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekk+rl+ eqv++LE+sFe  +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlE+dy++Lk+++dalk++n++L++++++L++e
  GSBRNA2T00130028001 110 EKKKRLNLEQVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDALKSDNDSLQAHNKKLHAE 199
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lk 92 
                          + 
  GSBRNA2T00130028001 200 VV 201
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.44E-1999168IPR009057Homeodomain-like
SMARTSM003892.6E-17109170IPR001356Homeobox domain
PROSITE profilePS5007116.552110166IPR001356Homeobox domain
CDDcd000863.04E-16111167No hitNo description
PfamPF000463.1E-15112164IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-19114174IPR009057Homeodomain-like
PRINTSPR000311.1E-5137146IPR000047Helix-turn-helix motif
PROSITE patternPS000270141164IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5146162IPR000047Helix-turn-helix motif
PfamPF021832.5E-16166205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MYEEEKSNIV NSQEELRLEM AFPQHGFMFQ QLHEDNAHHL PSPTSLPSCP PHLFYGGGNY  60
MMNRSMSFTG VSDHHHLTKK SPTTTNMNDQ DQVGDEDNLS DDGSHMMLGE KKKRLNLEQV  120
RALEKSFELG NKLEPERKMQ LAKALGLQPR QIAIWFQNRR ARWKTKQLER DYDSLKKQFD  180
ALKSDNDSLQ AHNKKLHAEV VALKKQDLKE SGKIKRESAE ASWSNNESTE NINNSSEGLK  240
DLFPSTIRSV TTSTTSAHIE HQMVQDQGFC NMFNGIDETT SAGYWAWPDQ QQQHHNHHHF  300
N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158166RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00130028001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2293640.0AK229364.1 Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06.
GenBankBT0440590.0BT044059.1 Arabidopsis thaliana unknown protein (At5g15150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728137.10.0homeobox-leucine zipper protein HAT7-like
SwissprotQ004661e-178HAT7_ARATH; Homeobox-leucine zipper protein HAT7
TrEMBLA0A397ZYL10.0A0A397ZYL1_BRACM; Uncharacterized protein
STRINGBo3g010120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-145homeobox 3
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]