PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00130025001

Common Name

GSBRNA2T00130025001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 528aa MW: 56839.9 Da PI: 6.6227

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00130025001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.7	6.4e-30	210	269	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+a+d +++++tYeg+H h+ GSBRNA2T00130025001 210 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCADDMSILITTYEGTHSHP 269 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.2E-31	195	271	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-27	203	271	IPR003657	WRKY domain
PROSITE profile	PS50811	28.69	205	271	IPR003657	WRKY domain
SMART	SM00774	9.3E-37	210	270	IPR003657	WRKY domain
Pfam	PF03106	4.3E-27	211	269	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006952	Biological Process	defense response
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence Send to blast
MEVLLKLPTS DSLLKDKFLG SAQILEASKG DDDHQELESA KAEMTEVKEE NEKLKGMLER 60 IESDYKSLKL RFFDIVQQEP SNNPTQDQNM VGLQKSTTDL SSFDQEHELV SLSLGKRSSS 120 PSDNTSKKED KEVNADEELT KAGLTLGFSN RSLSSQENSS GETWPSGKVT GKRSSPAPAS 180 CGDVEGEAGQ QNNVKRARVC VRARCDTPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP 240 GCPVRKQVQR CADDMSILIT TYEGTHSHPL PLSATTMAST TSAAASMLLS GSSSSSSSAA 300 EMIGNNLYDN SRFINNNKSF YSPTLHSPLH PTVTLDLTTP QHSSSSSLPS LNFNKYSNSF 360 QNFPSTSLNF SSNPSLSSST TLSIPAVWGS GYSSYTPYPY NNVQFGTSNL GKTVQNSQSL 420 TETLTKALTS DPSFQTVIAA AISSMVGSNG EKQIVNPISN NVQQTATTNN IKGCGGYFSS 480 LLMSNIIANN QTGASLDQPP SQPPLSMFKN SSSSSSTTSF VNKEEKS*

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence Send to blast

MEVLLKLPTS DSLLKDKFLG SAQILEASKG DDDHQELESA KAEMTEVKEE NEKLKGMLER  60
IESDYKSLKL RFFDIVQQEP SNNPTQDQNM VGLQKSTTDL SSFDQEHELV SLSLGKRSSS  120
PSDNTSKKED KEVNADEELT KAGLTLGFSN RSLSSQENSS GETWPSGKVT GKRSSPAPAS  180
CGDVEGEAGQ QNNVKRARVC VRARCDTPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP  240
GCPVRKQVQR CADDMSILIT TYEGTHSHPL PLSATTMAST TSAAASMLLS GSSSSSSSAA  300
EMIGNNLYDN SRFINNNKSF YSPTLHSPLH PTVTLDLTTP QHSSSSSLPS LNFNKYSNSF  360
QNFPSTSLNF SSNPSLSSST TLSIPAVWGS GYSSYTPYPY NNVQFGTSNL GKTVQNSQSL  420
TETLTKALTS DPSFQTVIAA AISSMVGSNG EKQIVNPISN NVQQTATTNN IKGCGGYFSS  480
LLMSNIIANN QTGASLDQPP SQPPLSMFKN SSSSSSTTSF VNKEEKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-21	197	271	1	74	WRKY transcription factor 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.13616	0.0	seed

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00130025001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC246585	0.0	KC246585.1 Brassica napus WRKY transcription factor 72.1 (WRKY72.1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001302793.1	0.0	probable WRKY transcription factor 72
Swissprot	Q9LXG8	0.0	WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBL	V9LYL3	0.0	V9LYL3_BRANA; WRKY transcription factor 72.1
STRING	Bra006283.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2959	28	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	0.0	WRKY DNA-binding protein 72

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]