PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129941001
Common NameGSBRNA2T00129941001, LOC106440923
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 266aa    MW: 30167.4 Da    PI: 8.6759
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129941001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.71.8e-29959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien   rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++gkl+e+ss
  GSBRNA2T00129941001  9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSS 59
                         79***********************************************96 PP

2K-box84.52.3e-28801748100
                K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                             ++++++++ ++e++ Lk+ei++Lq+++ h++G+ L+ LslkeLq+Le+qL+ sl ++R++K+ ll++q+ee++ ke++++ en++Lr
  GSBRNA2T00129941001  80 PgiNCKTENQEECTEVDLLKDEISMLQEKHLHMQGKRLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLR 169
                          34578999********************************************************************************** PP

                K-box  96 kklee 100
                          ++++e
  GSBRNA2T00129941001 170 RQVQE 174
                          **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.6E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.8161IPR002100Transcription factor, MADS-box
CDDcd002657.33E-43277No hitNo description
SuperFamilySSF554552.22E-31274IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-30323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-303859IPR002100Transcription factor, MADS-box
PfamPF014868.1E-1786172IPR002487Transcription factor, K-box
PROSITE profilePS5129712.89788178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFSST  60
RCMKKTLLRY GNYQISSDVP GINCKTENQE ECTEVDLLKD EISMLQEKHL HMQGKRLNLL  120
SLKELQHLEK QLNFSLISVR ERKELLLTKQ LEESRLKEQR AELENETLRR QVQELRSFLP  180
SINQHYAPSY IRCFAIDPKN SLLSNTCLGD INCSLQNTNS DTTLQLGLPG EAHDTRKNEG  240
DRESPSSDSV TTSTTRATAQ RISLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-22173172MEF2 CHIMERA
6byy_B2e-22173172MEF2 CHIMERA
6byy_C2e-22173172MEF2 CHIMERA
6byy_D2e-22173172MEF2 CHIMERA
6bz1_A2e-22173172MEF2 CHIMERA
6bz1_B2e-22173172MEF2 CHIMERA
6bz1_C2e-22173172MEF2 CHIMERA
6bz1_D2e-22173172MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129941001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009131359.10.0PREDICTED: agamous-like MADS-box protein AGL15 isoform X1
RefseqXP_013738153.10.0agamous-like MADS-box protein AGL15 isoform X3
RefseqXP_013738155.20.0agamous-like MADS-box protein AGL15 isoform X1
SwissprotQ392950.0AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A3P5ZVI20.0A0A3P5ZVI2_BRACM; Uncharacterized protein
STRINGBo3g009340.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75182538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-124AGAMOUS-like 15
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]