PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00129941001 | ||||||||
Common Name | GSBRNA2T00129941001, LOC106440923 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 266aa MW: 30167.4 Da PI: 8.6759 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.7 | 1.8e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRr+g+lKKA+ELSvLCdaevavi+fs++gkl+e+ss GSBRNA2T00129941001 9 KRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 84.5 | 2.3e-28 | 80 | 174 | 8 | 100 |
K-box 8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 ++++++++ ++e++ Lk+ei++Lq+++ h++G+ L+ LslkeLq+Le+qL+ sl ++R++K+ ll++q+ee++ ke++++ en++Lr GSBRNA2T00129941001 80 PgiNCKTENQEECTEVDLLKDEISMLQEKHLHMQGKRLNLLSLKELQHLEKQLNFSLISVRERKELLLTKQLEESRLKEQRAELENETLR 169 34578999********************************************************************************** PP K-box 96 kklee 100 ++++e GSBRNA2T00129941001 170 RQVQE 174 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.6E-43 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.8 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.33E-43 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.22E-31 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.1E-17 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.897 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAHELSVLCD AEVAVIVFSK SGKLFEFSST 60 RCMKKTLLRY GNYQISSDVP GINCKTENQE ECTEVDLLKD EISMLQEKHL HMQGKRLNLL 120 SLKELQHLEK QLNFSLISVR ERKELLLTKQ LEESRLKEQR AELENETLRR QVQELRSFLP 180 SINQHYAPSY IRCFAIDPKN SLLSNTCLGD INCSLQNTNS DTTLQLGLPG EAHDTRKNEG 240 DRESPSSDSV TTSTTRATAQ RISLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-22 | 1 | 73 | 1 | 72 | MEF2 CHIMERA |
6byy_B | 2e-22 | 1 | 73 | 1 | 72 | MEF2 CHIMERA |
6byy_C | 2e-22 | 1 | 73 | 1 | 72 | MEF2 CHIMERA |
6byy_D | 2e-22 | 1 | 73 | 1 | 72 | MEF2 CHIMERA |
6bz1_A | 2e-22 | 1 | 73 | 1 | 72 | MEF2 CHIMERA |
6bz1_B | 2e-22 | 1 | 73 | 1 | 72 | MEF2 CHIMERA |
6bz1_C | 2e-22 | 1 | 73 | 1 | 72 | MEF2 CHIMERA |
6bz1_D | 2e-22 | 1 | 73 | 1 | 72 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00129941001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009131359.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL15 isoform X1 | ||||
Refseq | XP_013738153.1 | 0.0 | agamous-like MADS-box protein AGL15 isoform X3 | ||||
Refseq | XP_013738155.2 | 0.0 | agamous-like MADS-box protein AGL15 isoform X1 | ||||
Swissprot | Q39295 | 0.0 | AGL15_BRANA; Agamous-like MADS-box protein AGL15 | ||||
TrEMBL | A0A3P5ZVI2 | 0.0 | A0A3P5ZVI2_BRACM; Uncharacterized protein | ||||
STRING | Bo3g009340.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7518 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 1e-124 | AGAMOUS-like 15 |
Link Out ? help Back to Top | |
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Entrez Gene | 106440923 |
Publications ? help Back to Top | |||
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