PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00129919001

Common Name

GSBRNA2T00129919001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ERF

Protein Properties

Length: 259aa MW: 28910.6 Da PI: 5.7148

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00129919001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.8	7.6e-20	76	125	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa a+++a++k++g GSBRNA2T00129919001 76 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAALAYDRAALKFKG 125 7******.******94....45**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	5.6E-33	75	134	IPR001471	AP2/ERF domain
Pfam	PF00847	2.1E-13	76	125	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.803	76	133	IPR001471	AP2/ERF domain
CDD	cd00018	1.34E-33	76	134	No hit	No description
SuperFamily	SSF54171	1.37E-22	76	134	IPR016177	DNA-binding domain
SMART	SM00380	4.0E-38	76	139	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.8E-12	77	88	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.8E-12	99	115	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MTSSVFIPNL YGKGLVPPET SAAENPSWNE SDVTAMISSL SRAIEYPTAD GHDPVKEELD 60 KSDQLQQDQD QPRKRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFETAE DAALAYDRAA 120 LKFKGTKAKL NFPERVQGPT TTSYVASQSG TDHAPRGGSE LMSSPPQLGP SSTTTTTTSW 180 PVNYNQDILQ YAQLLTSNSD VDLSYYTSSL FSQQQQPFST PSSSSSSSLA FQQTQQQQQQ 240 QREDEKSYGY HYYNYPRE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-28	75	136	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in pollen grains. {ECO:0000269\|PubMed:21069430}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:21069430, ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:22661072}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00129919001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269\|PubMed:16133218, ECO:0000269\|PubMed:21069430, ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189391	0.0	AC189391.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB054G07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009131332.1	1e-162	PREDICTED: ethylene-responsive transcription factor ERF113-like
Refseq	XP_013728196.1	1e-162	ethylene-responsive transcription factor ERF113-like
Refseq	XP_013728199.1	1e-162	ethylene-responsive transcription factor ERF113-like
Refseq	XP_022567154.1	1e-162	ethylene-responsive transcription factor ERF113-like
Swissprot	Q9LYU3	5e-84	EF113_ARATH; Ethylene-responsive transcription factor ERF113
TrEMBL	M4CPQ6	0.0	M4CPQ6_BRARP; Uncharacterized protein
STRING	Bra006195.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13330.1	2e-64	related to AP2 6l

Publications ? help Back to Top
Huang Z,Zhao P,Medina J,Meilan R,Woeste K Roles of JnRAP2.6-like from the transition zone of black walnut in hormone signaling. PLoS ONE, 2013. 8(11): p. e75857 [PMID:24265672] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Hickman R, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470] Matsuoka K, et al. RAP2.6L and jasmonic acid-responsive genes are expressed upon Arabidopsis hypocotyl grafting but are not needed for cell proliferation related to healing. Plant Mol. Biol., 2018. 96(6): p. 531-542 [PMID:29344830] Yang S,Poretska O,Sieberer T ALTERED MERISTEM PROGRAM1 Restricts Shoot Meristem Proliferation and Regeneration by Limiting HD-ZIP III-Mediated Expression of RAP2.6L. Plant Physiol., 2018. 177(4): p. 1580-1594 [PMID:29884678]