PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129789001
Common NameGSBRNA2T00129789001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 387aa    MW: 43147.7 Da    PI: 6.3796
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129789001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.68.7e-083253582154
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          k +yp++e++++L +++gL+ +q+ +WF N+R +
  GSBRNA2T00129789001 325 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 358
                          469*****************************87 PP
2ELK292.5e-10279300122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++++++++E++
  GSBRNA2T00129789001 279 ELKHELKQGYKEKIVDIREEIL 300
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.7E-20113157IPR005540KNOX1
PfamPF037908.2E-18116156IPR005540KNOX1
SMARTSM012568.5E-28170225IPR005541KNOX2
PfamPF037911.9E-20175224IPR005541KNOX2
PROSITE profilePS512139.969279299IPR005539ELK domain
PfamPF037898.8E-7279300IPR005539ELK domain
SMARTSM011886.1E-4279300IPR005539ELK domain
PROSITE profilePS5007111.726299362IPR001356Homeobox domain
SMARTSM003892.4E-11301366IPR001356Homeobox domain
SuperFamilySSF466894.71E-16301366IPR009057Homeodomain-like
CDDcd000863.08E-11302363No hitNo description
Gene3DG3DSA:1.10.10.602.5E-25306363IPR009057Homeodomain-like
PfamPF059201.0E-17319358IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MAFHHNHFNH FTDQQHQPPL PPPPQQQEHH FHESTPPNWL LRSDNNFLNL HTPASAAATS  60
SDSPSSAAAN QWLSRSSSFL QRGGGGANNN NVGSGDAMEN VAGGEESMIG ENARQKAEIL  120
SHPLYEQLLS AHVACLRIAT PVDQLPRIDA QLAQSQNVVA KYSTLDAASQ GLISGDDKEL  180
DHFMSHYVLL LCSFKEQLQQ HVRVHAMEAV MACWEIEQSL QSFTGVSPGE GTGATMSEDE  240
DEQVESDAHL FDGSLDGLGF GPLVPTESER SLMERVRQEL KHELKQGYKE KIVDIREEIL  300
RKRRAGKLPG DTTSVLKAWW QSHSKWPYPT EEDKARLVQE TGLQLKQINN WFINQRKRNW  360
HSNPSSSTAS KNKRRSNAGE NSGRER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-12302366872Homeobox protein PKNOX1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129789001
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533380.0AK353338.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-40-P19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013726318.10.0homeobox protein knotted-1-like 4 isoform X1
SwissprotP480010.0KNAT4_ARATH; Homeobox protein knotted-1-like 4
TrEMBLA0A397ZTF30.0A0A397ZTF3_BRACM; Uncharacterized protein
STRINGBra006085.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44428158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.10.0KNOTTED1-like homeobox gene 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]