PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00129692001 | ||||||||
Common Name | GSBRNA2T00129692001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | TCP | ||||||||
Protein Properties | Length: 177aa MW: 18594.9 Da PI: 11.2823 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 133.7 | 1.7e-41 | 27 | 139 | 2 | 112 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgka 90 a+kk + +++hTkv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ + s sss + g++ GSBRNA2T00129692001 27 AVKKPPAKDRHTKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStASLSTSSSFTLGKRGQQ 116 79*******************************************************************888433333333333333344 PP TCP 91 aksaa.kskksqksaasalnlak 112 ++++ ++++q++a++a ++ + GSBRNA2T00129692001 117 QAATLfVRQQQQQQASAAAAMGE 139 44444344444444443333333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.59 | 33 | 87 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-34 | 33 | 133 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MTSNDGSVPN GVIVEHPSVV NKGALNAVKK PPAKDRHTKV DGRGRRIRMP IICAARVFQL 60 TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTA SLSTSSSFTL GKRGQQQAAT 120 LFVRQQQQQQ ASAAAAMGEA SAARVGNYLP GHHLNLLASL SGGNTGSGRR EEDNPR* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves, roots, and stems. {ECO:0000269|PubMed:19286557}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269|PubMed:19286557}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00129692001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189332 | 2e-98 | AC189332.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038E05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009122445.1 | 1e-82 | PREDICTED: transcription factor TCP21-like | ||||
Swissprot | Q9FTA2 | 5e-65 | TCP21_ARATH; Transcription factor TCP21 | ||||
TrEMBL | A0A397XPX2 | 3e-81 | A0A397XPX2_BRACM; Uncharacterized protein | ||||
TrEMBL | M4CYP1 | 3e-81 | M4CYP1_BRARP; Uncharacterized protein | ||||
STRING | Bra009338.1-P | 6e-82 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1782 | 26 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08330.1 | 5e-44 | TCP family protein |
Publications ? help Back to Top | |||
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