PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00129681001

Common Name

GSBRNA2T00129681001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bZIP

Protein Properties

Length: 171aa MW: 20459.8 Da PI: 6.5687

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00129681001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.3	1.6e-08	60	105	4	48
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLea.eNkaLkke 48 kr rr+ +NRe+ArrsR RK+++i e + v++L+ N L ++ GSBRNA2T00129681001 60 EKRLRRMVSNRESARRSRMRKRKQIREMKMNVEQLTVdANYNLYNK 105 59*********************************85145555433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.006	57	129	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.163	59	95	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.8E-7	60	119	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.63E-7	61	108	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.1E-7	61	127	No hit	No description
CDD	cd14702	4.13E-12	62	114	No hit	No description
PROSITE pattern	PS00036	0	64	79	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MEAEYQHCSH YFNLYEGDAS QNDHFNLQNP QNDHDHDHDQ DLHVHDHCSH PQASVVMDQE 60 KRLRRMVSNR ESARRSRMRK RKQIREMKMN VEQLTVDANY NLYNKVISLL EKTRQILHEN 120 SQLEEKLSYF HQYFMEDRMV LPGNNIDCDI TRQYLHQPTC YLLDSISPSI *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	82	MRKRKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00129681001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241004	0.0	AC241004.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026J02, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010491438.1	7e-33	PREDICTED: bZIP transcription factor 2
TrEMBL	A0A397ZZ65	1e-105	A0A397ZZ65_BRACM; Uncharacterized protein
TrEMBL	M4CP33	1e-105	M4CP33_BRARP; Uncharacterized protein
STRING	Bra005971.1-P	1e-106	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17031	8	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08141.1	1e-16	basic leucine-zipper 75

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]