PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129631001
Common NameGSBRNA2T00129631001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ARR-B
Protein Properties Length: 569aa    MW: 64479.2 Da    PI: 6.2491
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129631001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like67.62e-21188241155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kp+++Wt  LH+ F++a++ + G +kA+Pk+ile m+++ Lt+e+++SHLQkYR+
  GSBRNA2T00129631001 188 KPKIKWTDCLHDLFLQAIRYI-GLDKAVPKKILEYMNLPYLTRENIASHLQKYRI 241
                          79*******************.********************************6 PP
2Response_reg54.27.9e-19119525109
                          EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          +v +++d+ eal +lk+++  +Dli++D  mp+m+Gl+l k+i++e  ++p+iv+++ ++    +e l  Gak fl Kp+ p ++ +
  GSBRNA2T00129631001  11 SVIAVKDPIEALSTLKTQRhnIDLIVTDYYMPHMNGLQLKKQITREFGNIPVIVMSSDSN--IEHESLACGAKCFLPKPIRPTDIPQ 95 
                          566899999*****9777777**********************99999********7776..8899****************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004480.0037197IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011027.1541101IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23006.1E-209107No hitNo description
CDDcd001561.90E-1710101No hitNo description
SuperFamilySSF521723.84E-1910113IPR011006CheY-like superfamily
PfamPF000725.6E-151196IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466896.99E-17186245IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-21187245IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-23188241IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MVLDPSFKEI SVIAVKDPIE ALSTLKTQRH NIDLIVTDYY MPHMNGLQLK KQITREFGNI  60
PVIVMSSDSN IEHESLACGA KCFLPKPIRP TDIPQIYQVA LTYKRNDKSI LWTEHNYRDT  120
DVSIPQQIQL HTEQANVLKT NNKRFSPISD SRPVNSSNGS YVSTDGSGEN RKRKSNGGSG  180
DDSRPLKKPK IKWTDCLHDL FLQAIRYIGL DKAVPKKILE YMNLPYLTRE NIASHLQKYR  240
IFLRKVAEQG FSCSRMLPTK GIDSIFLQAH LRDPCYNNYA SSSSSLYDTT INNRSFYSKP  300
IQSYGQSRLL SNTAEPVRFN QMPYNYMNRN LSFPIQPSQN EGRRSLFEPT VMANKTVQTS  360
QAMGFGQHGL SAINGNSFNN NMVSSYGRLT PTQPGMMSYE NLTPRPSNFS YGMQMFLNNE  420
NTTYKPQAHD NATTQPNLEI PTLENLSLCD ELLCEISNFQ IDHNKQQEEA VSTNKFELPA  480
NFETELNQFF SLEENGDGNF VNINQGRSDG ETSNIVAAPE TNYPVFNMNP NHEQEQGVPG  540
FVDWSSLDPK DFANEYDFVD SLLTNDMN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-18187247464ARR10-B
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mainly expressed in siliques. Also found in germinating seedlings, stems, flowers and roots, but not in rosette leaves. {ECO:0000269|PubMed:15173562, ECO:0000269|Ref.3}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129631001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1636521e-31AL163652.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T28J14 (ESSA project).
GenBankCP0026881e-31CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475513.10.0PREDICTED: putative two-component response regulator ARR21 isoform X1
SwissprotQ9LYP50.0ARR21_ARATH; Putative two-component response regulator ARR21
TrEMBLA0A397ZRE90.0A0A397ZRE9_BRACM; Uncharacterized protein
TrEMBLM4CNZ00.0M4CNZ0_BRARP; Uncharacterized protein
STRINGBra005928.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61131737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.10.0response regulator 21
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]