PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00128826001

Common Name

GSBRNA2T00128826001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YB

Protein Properties

Length: 643aa MW: 73177.9 Da PI: 7.8073

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00128826001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	80.2	2.9e-25	279	360	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 rW+++ev+aLi+ r+++ee+ + + + W++vs+km+erg+ers+k+Ckekwen+nk+yk++ eg+k ++e+s+t +yf++l GSBRNA2T00128826001 279 RWPHEEVQALIDSRSQVEEKTGFH--RVAIWDDVSAKMKERGYERSAKKCKEKWENMNKYYKRVVEGKKT-QPEHSKTRSYFEKL 360 8*****************9998..899************************************8.59********98 PP
2	NF-YB	171.9	7e-54	464	560	1	97
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 vreqdrf+Pianv+rim+++lPa+akis+d+ket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++y GSBRNA2T00128826001 464 VREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRY 553 59************************************************************************************** PP NF-YB 91 relegek 97 releg++ GSBRNA2T00128826001 554 RELEGDR 560 ***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.6E-18	278	360	No hit	No description
CDD	cd12203	4.44E-22	278	340	No hit	No description
SuperFamily	SSF46689	6.91E-5	278	362	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.097	279	334	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.20.10	9.0E-49	460	560	IPR009072	Histone-fold
SuperFamily	SSF47113	2.01E-36	467	560	IPR009072	Histone-fold
Pfam	PF00808	4.7E-24	470	534	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.4E-15	498	516	No hit	No description
PROSITE pattern	PS00685	0	501	517	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.4E-15	517	535	No hit	No description
PRINTS	PR00615	1.4E-15	536	554	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MELLAGNCRK RPADDFAEDV DPFGSSEWMY GSRSLRTQGN DDALATLADL APPPQKLKPI 60 RCVVKPPSED RQHPLDILAG SLDRLPPEMG FLGDGGCFEA PLGSKIADVE ESGQLTRGFS 120 KDEVEMEVRG RVSRRDGVSL SSSADSDSDS SQGGRKGKRK RKTREKMEHF VEKLVGSMMK 180 RQEKMHNQLI KVMEKMEHER IRSEEAWRQQ EIERMKQNEE ARMREMSRSS SIISFIKSVI 240 GEEEDIEMPN LTIPLPKQCE SAHQRQGDDV KFVFPSGRRW PHEEVQALID SRSQVEEKTG 300 FHRVAIWDDV SAKMKERGYE RSAKKCKEKW ENMNKYYKRV VEGKKTQPEH SKTRSYFEKL 360 GKLYKTNSVV EKEDILFSLS SSSLLQMILY LEHCFFYMHA TNLKVVTLKK DMERGGFHGY 420 RKFSLNTTNP SEPAKFLMAE GSMQLAEPNQ TNKTANGGEE ECTVREQDRF MPIANVIRIM 480 RRILPAHAKI SDDSKETIQE CVSEYISFIT GEANERCQRE QRKTITAEDV LWAMSKLGFD 540 DYIEPLTLYL HRYRELEGDR GVGYNAGSVG MTSGMVVKRP NGTMGEYGAY GVVPGMHMAP 600 YHYRHQKGYA YSGNEPDSKM GGPSSAANGS RVELFPTQQH KY*

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MELLAGNCRK RPADDFAEDV DPFGSSEWMY GSRSLRTQGN DDALATLADL APPPQKLKPI  60
RCVVKPPSED RQHPLDILAG SLDRLPPEMG FLGDGGCFEA PLGSKIADVE ESGQLTRGFS  120
KDEVEMEVRG RVSRRDGVSL SSSADSDSDS SQGGRKGKRK RKTREKMEHF VEKLVGSMMK  180
RQEKMHNQLI KVMEKMEHER IRSEEAWRQQ EIERMKQNEE ARMREMSRSS SIISFIKSVI  240
GEEEDIEMPN LTIPLPKQCE SAHQRQGDDV KFVFPSGRRW PHEEVQALID SRSQVEEKTG  300
FHRVAIWDDV SAKMKERGYE RSAKKCKEKW ENMNKYYKRV VEGKKTQPEH SKTRSYFEKL  360
GKLYKTNSVV EKEDILFSLS SSSLLQMILY LEHCFFYMHA TNLKVVTLKK DMERGGFHGY  420
RKFSLNTTNP SEPAKFLMAE GSMQLAEPNQ TNKTANGGEE ECTVREQDRF MPIANVIRIM  480
RRILPAHAKI SDDSKETIQE CVSEYISFIT GEANERCQRE QRKTITAEDV LWAMSKLGFD  540
DYIEPLTLYL HRYRELEGDR GVGYNAGSVG MTSGMVVKRP NGTMGEYGAY GVVPGMHMAP  600
YHYRHQKGYA YSGNEPDSKM GGPSSAANGS RVELFPTQQH KY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	8e-60	463	555	5	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00128826001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC787666	0.0	KC787666.1 Brassica napus transcription factor subunit NF-YB6A (NF-YB6A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013598760.1	0.0	PREDICTED: trihelix transcription factor GT-2-like
TrEMBL	A0A3P6ET51	0.0	A0A3P6ET51_BRAOL; Uncharacterized protein
STRING	Bo7g077820.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9411	27	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.1	1e-138	nuclear factor Y, subunit B6

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]