PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00128798001
Common NameGSBRNA2T00128798001, LOC106411533
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 275aa    MW: 30783.6 Da    PI: 8.1421
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00128798001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18121175256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q   Lee F+++++++ +++  LAkkl+Lt rqV vWFqNrRa+ k
  GSBRNA2T00128798001 121 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTK 175
                          788899***********************************************98 PP
2HD-ZIP_I/II120.58.8e-39121210191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+++LEe+F+e+++L+p++K +la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke  eLr +
  GSBRNA2T00128798001 121 RKKLRLSKDQSAFLEETFKEHNTLNPKQKLALAKKLNLTARQVEVWFQNRRARTKLKQTEVDCEYLKRCVEKLTEENRRLQKEAMELR-T 209
                          69*************************************************************************************9.4 PP

          HD-ZIP_I/II  91 l 91 
                          l
  GSBRNA2T00128798001 210 L 210
                          4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.0E-19191IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.3E-18101178IPR009057Homeodomain-like
SuperFamilySSF466898.55E-19103178IPR009057Homeodomain-like
PROSITE profilePS5007117.313117177IPR001356Homeobox domain
SMARTSM003896.9E-16119181IPR001356Homeobox domain
PfamPF000469.5E-16121175IPR001356Homeobox domain
CDDcd000869.22E-16121178No hitNo description
PROSITE patternPS000270152175IPR017970Homeobox, conserved site
PfamPF021833.9E-8177210IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.1E-23177220IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MMRKEDLGLS LSLGLSQDPT PLPLSQNPNS SISNNLHRFP WNQTFASTSD LGKIDVNSLP  60
TTVDCEEEPG VSSPNSTISS TISGGKRSER EGISEHDAIT PDRGYSRGTS DEEEDGGETS  120
RKKLRLSKDQ SAFLEETFKE HNTLNPKQKL ALAKKLNLTA RQVEVWFQNR RARTKLKQTE  180
VDCEYLKRCV EKLTEENRRL QKEAMELRTL KLSPQFYGQM TPPTTLIMCP SCERVAGPSS  240
NHQHNHRPVP VNPWVACAGQ VTHGLNFEVL RPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125SRKKLRL
2169177RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.214986e-91flower| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00128798001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4284501e-171AF428450.1 Arabidopsis thaliana AT5g47370/MQL5_23 mRNA, complete cds.
GenBankAJ4311831e-171AJ431183.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein HAT2 (hat2 gene).
GenBankATU093351e-171U09335.1 Arabidopsis thaliana clone HAT2 homeobox protein mRNA, partial cds.
GenBankAY0523241e-171AY052324.1 Arabidopsis thaliana AT5g47370/MQL5_23 mRNA, complete cds.
GenBankAY0619041e-171AY061904.1 Arabidopsis thaliana AT5g47370/MQL5_23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013707771.10.0homeobox-leucine zipper protein HAT2
SwissprotP466011e-177HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLM4E8420.0M4E842_BRARP; Uncharacterized protein
STRINGBra024948.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15632690
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.11e-134Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]