PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00128786001
Common NameGSBRNA2T00128786001, LOC106409024
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 311aa    MW: 34942.2 Da    PI: 5.0361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00128786001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-20169219255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g++++eIrdp+++g   r++lg+f+ta eAa+a+++a+ +l+g
  GSBRNA2T00128786001 169 HYRGVRQRP-WGKFASEIRDPNKRG--SRIWLGTFDTAIEAARAYDEAAFRLRG 219
                          7********.**********96655..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-33168228IPR001471AP2/ERF domain
CDDcd000182.40E-32169227No hitNo description
PROSITE profilePS5103224.026169227IPR001471AP2/ERF domain
SMARTSM003802.1E-37169233IPR001471AP2/ERF domain
PfamPF008475.6E-14169219IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22169229IPR016177DNA-binding domain
PRINTSPR003671.2E-10170181IPR001471AP2/ERF domain
PRINTSPR003671.2E-10193209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MANPSEVSSA LWFIEKHLLD VVSPVAKDRW MIHESAAKDS SSDSSPMIFG SSSSSSSSSA  60
PIDCSESEIK PEIIDLSTPR FMDLISTPFE FNTDVSVSVS DFDFEPTFQT VNQFEPEFKT  120
QIPCASDDSH SNRKPPLKIS VPIKTEWIQF NPQPEVTKPV QPDAEEQRHY RGVRQRPWGK  180
FASEIRDPNK RGSRIWLGTF DTAIEAARAY DEAAFRLRGS KAILNFPLEV GKWKSRKEAD  240
GEKKRKRDEI ENEHVAVVEK VLKTEQSVNG KEAFNLTEFC DWDVTGLLNF PLLSPLSPHP  300
SFGYSQLTVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-30168230163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-30168230466ATERF1
3gcc_A3e-30168230466ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.248681e-114root
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00128786001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834940.0AC183494.1 Brassica oleracea Contig C, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013705163.10.0ethylene-responsive transcription factor 5
SwissprotO803411e-137EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A3P6EPF90.0A0A3P6EPF9_BRAOL; Uncharacterized protein
STRINGBo7g077410.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-106ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]