PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00128661001 | ||||||||
Common Name | GSBRNA2T00128661001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 453aa MW: 50038 Da PI: 5.4029 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.9 | 7.4e-13 | 276 | 321 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L GSBRNA2T00128661001 276 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAISYINEL 321 799***********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.5E-47 | 53 | 216 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 17.282 | 272 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.63E-15 | 275 | 326 | No hit | No description |
SuperFamily | SSF47459 | 1.83E-18 | 275 | 341 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-10 | 276 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.0E-18 | 276 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-17 | 278 | 327 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MNDYLLNESA PTEDNASTAM EAFIRTNHSS LWPQPPVPTP SLPSLSQFNE DTLQQRLQAL 60 IESAGEKWTY AIFWQISHDF ESPTGDNAVV LGWGDGYYKG EEDKEKKKKS SNSNPAEQEH 120 RKREVTDTEW FFLVSMTQSF ANGVGLPGES FLNSRVIWLS GSGALTGSGC ERASQGQIYG 180 LQTMVCIAAE NGVVELGSSE AISQSSDLMD KVNSLFNSNN GMLSFSTVVR STAKSGESDH 240 SDLEASVVKE AIVVEPEKKP RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYSLRAVVP 300 NVSKMDKASL LGDAISYINE LKSKLQQAES DKEEIQKQLD GMSKEGNGKS GASRAVRERK 360 SSYQDSASSV EMEIDVKIIG WDVMIRVQCS KKNHPGSRFM DALKELDLEV NHASLSVVND 420 LMIQQATVKM GSQFFNHDQL KAALMLKVGG DN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rru_A | 3e-97 | 6 | 212 | 4 | 227 | Transcription factor MYC3 |
4ywc_A | 3e-97 | 6 | 212 | 4 | 227 | Transcription factor MYC3 |
4ywc_B | 3e-97 | 6 | 212 | 4 | 227 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 257 | 265 | KKPRKRGRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.6979 | 0.0 | flower| leaf| seed |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutively expressed in roots, stems, leaves, flowers, and seedlings. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:21335373}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in tryptophan, jasmonic acid (JA) and other stress-responsive gene regulation. With MYC2 and MYC4, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269|PubMed:12136026, ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21321051, ECO:0000269|PubMed:21335373, ECO:0000269|PubMed:23943862}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00128661001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Barely up-regulated by jasmonic acid. {ECO:0000269|PubMed:21242320, ECO:0000269|PubMed:21335373}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK352707 | 0.0 | AK352707.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-E20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013598243.1 | 1e-160 | PREDICTED: transcription factor MYC3 | ||||
Swissprot | Q9FIP9 | 1e-137 | MYC3_ARATH; Transcription factor MYC3 | ||||
TrEMBL | A0A078J098 | 0.0 | A0A078J098_BRANA; BnaA06g40330D protein | ||||
STRING | Bo7g075710.1 | 1e-159 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1265 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 1e-126 | bHLH family protein |