PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00128358001

Common Name

GSBRNA2T00128358001, LOC106357864

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 330aa MW: 36087.3 Da PI: 5.2728

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00128358001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.1e-10	163	210	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ Ka +L + ++Y++sLq GSBRNA2T00128358001 163 SHSLAERARREKISERMTLLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 210 8************************....9*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.85E-11	157	214	No hit	No description
SuperFamily	SSF47459	7.33E-17	157	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.542	159	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.9E-17	159	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-7	163	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.6E-10	165	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MENQREESIK YVALGQSDDP FGNEGTIGDL LVGRFCNPQE PISPYPPGIL RFPPYPGQFG 60 SQDSNKSSLL DPDLDRVQTA KPNSRKRKLI PSASASASGG NGKDSPASSS LTASNSKVSG 120 EIVGSKRSKQ DEAGSSNKDD AKPPEPPKDY IHVRARRGQA TDSHSLAERA RREKISERMT 180 LLQDLVPGCN RITGKAVMLD EIINYVQSLQ RQVEFLSMKL ATINPRMEFN PSAALSTEMV 240 QPGEALTQSL YSMACSEQRL PSAYYSLAKN MPRFSDAQFP STDAFVQAET QGFWENDLQS 300 IVQMGFGDVQ QQSNNNSCSE PTLQMKLEP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28854	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00128358001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY065441	1e-161	AY065441.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.
GenBank	AY096536	1e-161	AY096536.1 Arabidopsis thaliana putative DNA-binding protein (At3g23690) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013653028.1	0.0	transcription factor bHLH77
Swissprot	Q9LK48	1e-173	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A3P6BK47	0.0	A0A3P6BK47_BRACM; Uncharacterized protein
STRING	Bra014972.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7406	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	1e-151	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	106357864

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]