PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127897001
Common NameGSBRNA2T00127897001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 673aa    MW: 76450 Da    PI: 6.3376
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127897001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS56.94.5e-18319401186
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                          l++lLl+cA+avs +d+++a+ lL  +++++s++gd ++Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  
  GSBRNA2T00127897001 319 LRSLLLSCAQAVSVNDHRRAEGLLRLVRQHSSSYGDGTERLAHYFANSLEARLAGTGTQVYTALSSKKTS---AADMLKAYQTYKT 401
                          689****************************************************************999...7888888887765 PP

2GRAS2645e-81404669110373
                 GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                          +++HiiDf+is+G+QW +L + La R++++ +lRiTg++ p+ g   ++ + etg+rLak++++++vpfe+n+ +a+++e+++le+L++k
  GSBRNA2T00127897001 404 NTIHIIDFGISYGFQWHSLVHRLAWRRGSTCKLRITGIDLPQRGfrPANGVIETGHRLAKYCKKFNVPFEYNA-IAQKWETIKLEDLKLK 492
                          689***************************************9999***************************.7*************** PP

                 GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                          +gE +aVn+ ++  +llde+v+++s+rd vL+l+++++P++++ +    ++n++ F++rf e l+++s+lfd+ +++l re+  r++ E+
  GSBRNA2T00127897001 493 EGEFVAVNSLFRFRNLLDETVAVDSPRDVVLRLIQKIKPNIFIPSILSGSYNAPFFVTRFREVLYHFSSLFDMCDTTLTREDPMRVVFEK 582
                          ****************************************************************************************** PP

                 GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                          e+ grei+nvvaceg++r+er e++++W+ r+ +aGF+++p++++ +++ +l++ k + s+++ v+++ +++++gWk+r +++ S+W
  GSBRNA2T00127897001 583 EFYGREIMNVVACEGTARVERPESYKQWQGRMVRAGFRQLPVEKELVQKLRLMVDKEYkSKEFDVDQDGNWFLQGWKGRLVYASSFW 669
                          ******************************************************9998899************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.074293649IPR005202Transcription factor GRAS
PfamPF035141.6E-15319401IPR005202Transcription factor GRAS
PfamPF035141.7E-78404669IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 673 aa     Download sequence    Send to blast
MGSYSAGFPG SFDNFHFNCK IDFSNLGNGL YLDDQPFLRS PSPFPPLPLP PLHPPPHPEP  60
YSQQNLHAAD ADADVDADDD CTDSVLQYIS QVLMEEDMDD KPCMFHDALS LQAAERSLYE  120
ALGEKYPDST SPIQLAHNPD ELSDITSSGY TSRTTTTTTT SSDWSFDSLE NSRPSWMQTS  180
IPKNFVFQST PSTRSSPTSG RNTGIRSSSS NDLLVIDVEN DHHYVPYRIT GEKCHWREDE  240
HLPEERNKKQ SAVYADDPEL SEMFDKILLF GDPKENPKCI LNETSQKEPP KASPSPKGET  300
TTYPRGQKPT AYVKEIPDLR SLLLSCAQAV SVNDHRRAEG LLRLVRQHSS SYGDGTERLA  360
HYFANSLEAR LAGTGTQVYT ALSSKKTSAA DMLKAYQTYK TMPNTIHIID FGISYGFQWH  420
SLVHRLAWRR GSTCKLRITG IDLPQRGFRP ANGVIETGHR LAKYCKKFNV PFEYNAIAQK  480
WETIKLEDLK LKEGEFVAVN SLFRFRNLLD ETVAVDSPRD VVLRLIQKIK PNIFIPSILS  540
GSYNAPFFVT RFREVLYHFS SLFDMCDTTL TREDPMRVVF EKEFYGREIM NVVACEGTAR  600
VERPESYKQW QGRMVRAGFR QLPVEKELVQ KLRLMVDKEY KSKEFDVDQD GNWFLQGWKG  660
RLVYASSFWV SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-363176693374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127897001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691065.10.0scarecrow-like protein 33
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A3P6CZH00.0A0A3P6CZH0_BRAOL; Uncharacterized protein
STRINGBo4g168030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]