PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00127897001 | ||||||||
Common Name | GSBRNA2T00127897001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRAS | ||||||||
Protein Properties | Length: 673aa MW: 76450 Da PI: 6.3376 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 56.9 | 4.5e-18 | 319 | 401 | 1 | 86 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l++lLl+cA+avs +d+++a+ lL +++++s++gd ++Rla+yf++ L+arla++++++y al++++ts ++ l+a++++ GSBRNA2T00127897001 319 LRSLLLSCAQAVSVNDHRRAEGLLRLVRQHSSSYGDGTERLAHYFANSLEARLAGTGTQVYTALSSKKTS---AADMLKAYQTYKT 401 689****************************************************************999...7888888887765 PP | |||||||
2 | GRAS | 264 | 5e-81 | 404 | 669 | 110 | 373 |
GRAS 110 ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 +++HiiDf+is+G+QW +L + La R++++ +lRiTg++ p+ g ++ + etg+rLak++++++vpfe+n+ +a+++e+++le+L++k GSBRNA2T00127897001 404 NTIHIIDFGISYGFQWHSLVHRLAWRRGSTCKLRITGIDLPQRGfrPANGVIETGHRLAKYCKKFNVPFEYNA-IAQKWETIKLEDLKLK 492 689***************************************9999***************************.7*************** PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287 +gE +aVn+ ++ +llde+v+++s+rd vL+l+++++P++++ + ++n++ F++rf e l+++s+lfd+ +++l re+ r++ E+ GSBRNA2T00127897001 493 EGEFVAVNSLFRFRNLLDETVAVDSPRDVVLRLIQKIKPNIFIPSILSGSYNAPFFVTRFREVLYHFSSLFDMCDTTLTREDPMRVVFEK 582 ****************************************************************************************** PP GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 e+ grei+nvvaceg++r+er e++++W+ r+ +aGF+++p++++ +++ +l++ k + s+++ v+++ +++++gWk+r +++ S+W GSBRNA2T00127897001 583 EFYGREIMNVVACEGTARVERPESYKQWQGRMVRAGFRQLPVEKELVQKLRLMVDKEYkSKEFDVDQDGNWFLQGWKGRLVYASSFW 669 ******************************************************9998899************************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.074 | 293 | 649 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-15 | 319 | 401 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-78 | 404 | 669 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MGSYSAGFPG SFDNFHFNCK IDFSNLGNGL YLDDQPFLRS PSPFPPLPLP PLHPPPHPEP 60 YSQQNLHAAD ADADVDADDD CTDSVLQYIS QVLMEEDMDD KPCMFHDALS LQAAERSLYE 120 ALGEKYPDST SPIQLAHNPD ELSDITSSGY TSRTTTTTTT SSDWSFDSLE NSRPSWMQTS 180 IPKNFVFQST PSTRSSPTSG RNTGIRSSSS NDLLVIDVEN DHHYVPYRIT GEKCHWREDE 240 HLPEERNKKQ SAVYADDPEL SEMFDKILLF GDPKENPKCI LNETSQKEPP KASPSPKGET 300 TTYPRGQKPT AYVKEIPDLR SLLLSCAQAV SVNDHRRAEG LLRLVRQHSS SYGDGTERLA 360 HYFANSLEAR LAGTGTQVYT ALSSKKTSAA DMLKAYQTYK TMPNTIHIID FGISYGFQWH 420 SLVHRLAWRR GSTCKLRITG IDLPQRGFRP ANGVIETGHR LAKYCKKFNV PFEYNAIAQK 480 WETIKLEDLK LKEGEFVAVN SLFRFRNLLD ETVAVDSPRD VVLRLIQKIK PNIFIPSILS 540 GSYNAPFFVT RFREVLYHFS SLFDMCDTTL TREDPMRVVF EKEFYGREIM NVVACEGTAR 600 VERPESYKQW QGRMVRAGFR QLPVEKELVQ KLRLMVDKEY KSKEFDVDQD GNWFLQGWKG 660 RLVYASSFWV SV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-36 | 317 | 669 | 3 | 374 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00127897001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013691065.1 | 0.0 | scarecrow-like protein 33 | ||||
Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
TrEMBL | A0A3P6CZH0 | 0.0 | A0A3P6CZH0_BRAOL; Uncharacterized protein | ||||
STRING | Bo4g168030.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |
Publications ? help Back to Top | |||
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