PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127359001
Common NameGSBRNA2T00127359001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TALE
Protein Properties Length: 602aa    MW: 66759.8 Da    PI: 6.863
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127359001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.5e-104184551954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   n+yps +++  LA+++gL+ +qV++WF N R +
  GSBRNA2T00127359001 418 FEHflNPYPSDADKHLLARQTGLSRNQVSNWFINARVR 455
                          665569******************************88 PP
2BELL122.71.5e-39276347172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r e+q++k+kLls+leeVd+rY++y+eq+q+v++sF++v+g+g+a pYt+lA+ka+SrhFrcLkda++ q+
  GSBRNA2T00127359001 276 DRIEHQRRKVKLLSMLEEVDRRYNHYCEQMQMVVNSFDQVMGYGAAIPYTTLAQKAMSRHFRCLKDAVVVQL 347
                          589*****************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.9E-82208345IPR006563POX domain
PfamPF075261.3E-51214343IPR006563POX domain
PROSITE profilePS5007112.86396459IPR001356Homeobox domain
SMARTSM003891.1E-9399463IPR001356Homeobox domain
CDDcd000861.08E-12399460No hitNo description
SuperFamilySSF466891.2E-17400466IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28402465IPR009057Homeodomain-like
PfamPF059202.7E-18416455IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MSQDYHHHQG IFSFSNGFHR PSSSHQEEVE ESAVSGAPIP VYETAGMLSE MFSYPGGGSG  60
EILDHSTKQL LEQQNRHNNN STLHMLLPNH HQGYRYANVQ QQHHFTWPSS SDHQSQGDMI  120
GTVHVEGGKG LSLSLSSSLE AVAAAKAEEY RSIYCAAVDG TSSSSNASAH QQFNQFKTLL  180
LDNSTSHHEA VGHFGSSSSS PMVASSSIGG IYTLRNSKYT KPAQELLEEF CSVGRGHFKK  240
NKLSRNNNSN PNTSGGGGSS SSPGVANDNP PLSPADRIEH QRRKVKLLSM LEEVDRRYNH  300
YCEQMQMVVN SFDQVMGYGA AIPYTTLAQK AMSRHFRCLK DAVVVQLKRS CELLGENETA  360
GAASSGLTKG ETPRLRLLEQ SLRQQRAFHH MGMMEQEAWR PQRGLPERSV NILRAWLFEH  420
FLNPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQEAK EREEKGVEDY  480
QQTNNSSNNS DTKPNESNFT LVQTITAQTP TTTMMTPTPH ENDSSFLPSS VVTAVPHSVS  540
DSFTAATCQQ DFSDHFQVND GVIRFGTKQA GDVSLTLGLR HTGNMPDNKN PSFSVRDFGD  600
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-15405462158Homeobox protein Meis1
4xrs_B1e-15405462158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.173980.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127359001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3530920.0AF353092.1 Arabidopsis thaliana BEL1-like homeobox 4 (BLH4) mRNA, complete cds.
GenBankAY0581790.0AY058179.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
GenBankAY1420190.0AY142019.1 Arabidopsis thaliana At2g23760/F27L4.6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013711622.10.0BEL1-like homeodomain protein 4
RefseqXP_013711623.10.0BEL1-like homeodomain protein 4
RefseqXP_022563927.10.0BEL1-like homeodomain protein 4
SwissprotQ94KL50.0BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLA0A0D3DVS80.0A0A0D3DVS8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FJY00.0A0A3P6FJY0_BRAOL; Uncharacterized protein
STRINGBo8g100290.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.30.0BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]