PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00127297001 | ||||||||
Common Name | GSBRNA2T00127297001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 92aa MW: 10255.1 Da PI: 11.4867 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.1 | 3e-22 | 5 | 89 | 6 | 92 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 + + ++++g l+lp +f+++hg++k++ +tl ++g +W +l+ + ++gr+ l+kGWk+F+ +ngLk+gD+++F+l+g++++ + GSBRNA2T00127297001 5 IEHASFRKGSLRLPLRFMKKHGLDKPR--LITLLGKDGTKWVANLRRESSGGRMRLGKGWKDFALDNGLKVGDSFTFELVGKNNTPP 89 556789999***************655..8***************88888888**************************99766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.1E-18 | 1 | 90 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 15.904 | 1 | 91 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.91E-23 | 2 | 88 | No hit | No description |
SuperFamily | SSF101936 | 5.89E-24 | 3 | 88 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 6.3E-21 | 4 | 89 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-22 | 7 | 87 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MTLTIEHASF RKGSLRLPLR FMKKHGLDKP RLITLLGKDG TKWVANLRRE SSGGRMRLGK 60 GWKDFALDNG LKVGDSFTFE LVGKNNTPPM I* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00127297001 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013603506.1 | 1e-57 | PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein REM12 | ||||
Swissprot | Q8S8E8 | 7e-23 | REML1_ARATH; B3 domain-containing protein REM-like 1 | ||||
TrEMBL | A0A0D3DVL1 | 2e-56 | A0A0D3DVL1_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g099620.1 | 4e-57 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7828 | 16 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24690.1 | 3e-25 | B3 family protein |
Publications ? help Back to Top | |||
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