PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127295001
Common NameGSBRNA2T00127295001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 532aa    MW: 61097.4 Da    PI: 8.9522
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127295001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-1418921094
                         HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3 10 vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                          ++++ l +p  f+ +h  k++++kt +l++  s  +W+vkl  ++++    +++GW+ F+ a++L++gD+vvF+++g+    lv+
  GSBRNA2T00127295001 18 GFTKH-LDIPVAFFLKHLDKSNKGKTAKLRSdASETTWNVKL--DGRR----FSDGWEYFAVAHDLRVGDIVVFRHEGE----LVF 92
                         55666.99*********667778999999997888*******..9998....9**********************7663....333 PP
2B362.75.9e-20147238296
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          f +++++++l++++++lpk fa  + + k  + +++l++e+ +sW+++l+ + +s+r++++kGW++F+ ang k gD+++Fk+++ +e++
  GSBRNA2T00127295001 147 FVITVTESNLRRDIVYLPKAFAVVNCLMK--KLEIVLMNEERESWKLYLTQESYSSRFYMSKGWRSFCVANGKKPGDMFTFKMVQ-NEAT 233
                          5677899***************9994443..348************************************************998.6666 PP

                          .EEEE CS
                   B3  92 lvvkv 96 
                          +v+k+
  GSBRNA2T00127295001 234 PVLKL 238
                          88876 PP
3B371.98.3e-23271361497
                          E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          + +++++ +++ ++lpkkfa+++g+k  +++++ l++e+g+sW+++l+++ +sgr+++++GW++F+ ang k gD++ Fkl++ + +++v
  GSBRNA2T00127295001 271 AIVTASNIRRDTMYLPKKFAASNGLK--SKFKIDLMNEKGESWTIELRHEPYSGRFLIRSGWRSFCVANGKKPGDMFNFKLIR-NVETPV 357
                          56789999****************99..7789**************************************************9.566678 PP

                          EEEE CS
                   B3  94 vkvf 97 
                          +k+f
  GSBRNA2T00127295001 358 LKLF 361
                          8877 PP
4B347.63e-154465301399
                          TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                   B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                          ++ l lp +f++ +g+k++e  ++++ d+ g +W+  l ++kk+++ + l+kG  +F++ ng+k g+++v++l++ +++ +v+k+++k
  GSBRNA2T00127295001 446 TSKLDLPLEFTKGNGIKNAE--KIKMIDRYGTTWSTSLLMDKKKRGaMKLGKGCIRFCEVNGVKMGESFVLELVW-EDTVPVLKFCSK 530
                          56699*********999666..8***************9955555559***************************.788899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-205102IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-206106IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.0398100IPR003340B3 DNA binding domain
CDDcd100172.02E-15995No hitNo description
SMARTSM010192.5E-2011100IPR003340B3 DNA binding domain
PfamPF023622.5E-92291IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-19140237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-20143239IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.987146242IPR003340B3 DNA binding domain
SMARTSM010197.3E-24146242IPR003340B3 DNA binding domain
CDDcd100175.21E-16146240No hitNo description
PfamPF023626.3E-18147238IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-21266359IPR015300DNA-binding pseudobarrel domain
CDDcd100171.03E-19268361No hitNo description
PROSITE profilePS5086314.833268364IPR003340B3 DNA binding domain
SuperFamilySSF1019361.0E-20268360IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-29269364IPR003340B3 DNA binding domain
PfamPF023622.6E-21271361IPR003340B3 DNA binding domain
SuperFamilySSF1019365.49E-15434530IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.502434530IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-15434530IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.4E-19439531IPR003340B3 DNA binding domain
CDDcd100173.63E-10443529No hitNo description
PfamPF023623.0E-13446530IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MAFCSPTNPH FFQPLLPGFT KHLDIPVAFF LKHLDKSNKG KTAKLRSDAS ETTWNVKLDG  60
RRFSDGWEYF AVAHDLRVGD IVVFRHEGEL VFYVTALGPS CCEIQYGEED SQEEDKSEEL  120
CDTMEKISRM KKRPKTEKKN SEDQSCFVIT VTESNLRRDI VYLPKAFAVV NCLMKKLEIV  180
LMNEERESWK LYLTQESYSS RFYMSKGWRS FCVANGKKPG DMFTFKMVQN EATPVLKLLP  240
LNNEDLHKLV DTEEVPKKKR QDIEADSSFV AIVTASNIRR DTMYLPKKFA ASNGLKSKFK  300
IDLMNEKGES WTIELRHEPY SGRFLIRSGW RSFCVANGKK PGDMFNFKLI RNVETPVLKL  360
FHLNLPKLGK FPLNMHKLEP SNDTRQGFEA TEKEFLGVQT NRDDSRQEPT NEAIRKGKWL  420
EANETTIKEE NITTSENRFV TLILTTSKLD LPLEFTKGNG IKNAEKIKMI DRYGTTWSTS  480
LLMDKKKRGA MKLGKGCIRF CEVNGVKMGE SFVLELVWED TVPVLKFCSK C*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.5390.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127295001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013660743.10.0B3 domain-containing protein REM10-like
SwissprotP0DH850.0REM10_ARATH; B3 domain-containing protein REM10
TrEMBLA0A3P6FJN10.0A0A3P6FJN1_BRAOL; Uncharacterized protein
STRINGBo8g099610.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]