PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00127074001 | ||||||||
Common Name | GSBRNA2T00127074001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 359aa MW: 39832.1 Da PI: 4.7066 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.8 | 1.2e-05 | 185 | 225 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++iN+++ +L++llP++ +K + + L +A++Y+ Lq GSBRNA2T00127074001 185 QKQTNDINKKMRNLQDLLPNS-----QKDDNEALLDEAINYMTTLQ 225 333468**************9.....8***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.91E-5 | 173 | 229 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-8 | 173 | 233 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 10.182 | 175 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0052 | 181 | 230 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-9 | 183 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MQMMFVLTKL IYCCCRLTDQ EYMELVFENG QILAKSQRSN GFSMHNQRTK SIVDLYEAEY 60 NEDFKKTIHG ADTSDKNLVD TQVVPEPLVV AAYETNMLMN QLNLIQSLKA SSSKRMVVDN 120 ENRKDIVPPD EQSVVAERSV ELGYDSTDFT EDSEESTYQS SSLDDVRPQV PARTSNVLVK 180 RRRKQKQTND INKKMRNLQD LLPNSQKDDN EALLDEAINY MTTLQHQVQD LQMMTMGNRF 240 VTPATMLPLG PQYSQMGLAT GMQMGVPQLL PAPVLGAGLP LVNTSADVLS VLNHPVGPVL 300 MPIQNSALFT PTENYLPQSV PPACAAFPNQ IPNSTISSNL DDARTHGGNL SGKESDKP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 185 | VKRRRKQK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00127074001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC172877 | 0.0 | AC172877.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH042F19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013605863.1 | 0.0 | PREDICTED: transcription factor PIF6 isoform X1 | ||||
Refseq | XP_013615363.1 | 0.0 | PREDICTED: transcription factor PIF6-like isoform X1 | ||||
Refseq | XP_013712402.1 | 0.0 | transcription factor PIF6-like isoform X1 | ||||
Refseq | XP_022564169.1 | 0.0 | transcription factor PIF6-like isoform X1 | ||||
Swissprot | Q8L5W7 | 1e-148 | PIF6_ARATH; Transcription factor PIF6 | ||||
TrEMBL | A0A0D3DV12 | 0.0 | A0A0D3DV12_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6FJ66 | 0.0 | A0A3P6FJ66_BRAOL; Uncharacterized protein | ||||
STRING | Bo02373s010.1 | 0.0 | (Brassica oleracea) | ||||
STRING | Bo8g097630.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13423 | 14 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62090.2 | 1e-139 | phytochrome interacting factor 3-like 2 |