PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00127012001
Common NameGSBRNA2T00127012001, LOC106360823
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 281aa    MW: 31420.2 Da    PI: 4.8148
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00127012001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-20140190255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr ++ +g+++AeIrdp   + + +r++lg+f+ta eAa+a+++a+ +l+g
  GSBRNA2T00127012001 140 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFDTAIEAARAYDQAAFRLRG 190
                          7********.**********9...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-32139199IPR001471AP2/ERF domain
PfamPF008471.6E-14140190IPR001471AP2/ERF domain
SMARTSM003801.3E-35140204IPR001471AP2/ERF domain
PROSITE profilePS5103223.973140198IPR001471AP2/ERF domain
CDDcd000185.60E-29140198No hitNo description
SuperFamilySSF541711.37E-22140200IPR016177DNA-binding domain
PRINTSPR003671.6E-10141152IPR001471AP2/ERF domain
PRINTSPR003671.6E-10164180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MATPSEASAL SFIKKHLLDE SSPLPKVTTT NPWIASETSS DFSIFGSFDQ TGFDFSEFET  60
KPEITDLVTP RFTDSFEFEP EANAEIQLAP SESFTFQSNP RRKPPLKIEP PSRTEWIQFA  120
TANPEPEQLP VHVAAEEKRH YRGVRMRPWG KFAAEIRDPN RRGTRVWLGT FDTAIEAARA  180
YDQAAFRLRG SKAIVNFPLE VGTWNPRADV GQNKRKRDGE GEEVTVVAKV LKTEESHAVE  240
TETSSLTAVD DWDLTELLSM PLLSPLSPHP PFGYPQLTVV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-28139203468ATERF1
3gcc_A3e-28139203468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00127012001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367910.0AC236791.1 Brassica napus clone JBr38I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013655947.10.0ethylene-responsive transcription factor 6
SwissprotQ8VZ911e-127EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLA0A3P6BQR10.0A0A3P6BQR1_BRACM; Uncharacterized protein
STRINGBra021049.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-116ethylene responsive element binding factor 6
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]