PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00127012001 | ||||||||
Common Name | GSBRNA2T00127012001, LOC106360823 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | ERF | ||||||||
Protein Properties | Length: 281aa MW: 31420.2 Da PI: 4.8148 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 3e-20 | 140 | 190 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeIrdp + + +r++lg+f+ta eAa+a+++a+ +l+g GSBRNA2T00127012001 140 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFDTAIEAARAYDQAAFRLRG 190 7********.**********9...4334*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.2E-32 | 139 | 199 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-14 | 140 | 190 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-35 | 140 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.973 | 140 | 198 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.60E-29 | 140 | 198 | No hit | No description |
SuperFamily | SSF54171 | 1.37E-22 | 140 | 200 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.6E-10 | 141 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 164 | 180 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MATPSEASAL SFIKKHLLDE SSPLPKVTTT NPWIASETSS DFSIFGSFDQ TGFDFSEFET 60 KPEITDLVTP RFTDSFEFEP EANAEIQLAP SESFTFQSNP RRKPPLKIEP PSRTEWIQFA 120 TANPEPEQLP VHVAAEEKRH YRGVRMRPWG KFAAEIRDPN RRGTRVWLGT FDTAIEAARA 180 YDQAAFRLRG SKAIVNFPLE VGTWNPRADV GQNKRKRDGE GEEVTVVAKV LKTEESHAVE 240 TETSSLTAVD DWDLTELLSM PLLSPLSPHP PFGYPQLTVV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-28 | 139 | 203 | 4 | 68 | ATERF1 |
3gcc_A | 3e-28 | 139 | 203 | 4 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00127012001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236791 | 0.0 | AC236791.1 Brassica napus clone JBr38I20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013655947.1 | 0.0 | ethylene-responsive transcription factor 6 | ||||
Swissprot | Q8VZ91 | 1e-127 | EF103_ARATH; Ethylene-responsive transcription factor 6 | ||||
TrEMBL | A0A3P6BQR1 | 0.0 | A0A3P6BQR1_BRACM; Uncharacterized protein | ||||
STRING | Bra021049.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 1e-116 | ethylene responsive element binding factor 6 |
Link Out ? help Back to Top | |
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Entrez Gene | 106360823 |
Publications ? help Back to Top | |||
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