PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126997001
Common NameGSBRNA2T00126997001, LOC106360841
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 735aa    MW: 82131.3 Da    PI: 6.4734
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126997001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.87.6e-1894148256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          ++ ++++++q++e+e++F+ n++p+ +++++L+++lgLt  qVk+WFqNrR + k
  GSBRNA2T00126997001  94 KRLHRHSTHQIQEMEAFFKVNPHPNDDDKTRLSEELGLTPLQVKFWFQNRRNQIK 148
                          4457899********************************************8765 PP
2START151.38.4e-482504752206
                          HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
                START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                          la ++ qel k+ + +ep+W k        s+n+d++ + f+   v    ++ ea+ra +vv+m++ +lv+ +ld   +W+e++     +
  GSBRNA2T00126997001 250 LAVSCVQELAKMCATNEPLWNKKGsdneiISLNEDVYKKMFQWPSVddnhFRREASRANTVVIMNSITLVNAFLDAD-KWSEMFCsivsR 338
                          578899**************9998767665566666666654333377778**************************.******999*9* PP

                          EEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.....-TTSEE-EESSEEEEEEEE CS
                START  79 aetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe....sssvvRaellpSgiliepk 157
                          a+t++ issg     g l lm+aelq++splvp R+ +f+Ry +q  +ag+w+ivd  vd   kp +    + ++ R    pSg++i+++
  GSBRNA2T00126997001 339 AKTIQIISSGvsgasGSLLLMYAELQVPSPLVPtREIYFLRYVKQnAEAGKWMIVDFPVDGLIKPASgittTDQYRR---KPSGFIIQDM 425
                          ************************************************************99999888775555555...********** PP

                          CTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 158 snghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                          sng+s++twvehv+++++++ h+++r  v+sg+a+ga +w+a l+rqce+
  GSBRNA2T00126997001 426 SNGYSQITWVEHVEVEEKHVhHEMVREYVESGAAFGAERWLAVLRRQCER 475
                          ********************9***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.19E-1876148IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-1890144IPR009057Homeodomain-like
PROSITE profilePS5007116.21290150IPR001356Homeobox domain
SMARTSM003891.2E-1791154IPR001356Homeobox domain
CDDcd000865.74E-1892151No hitNo description
PfamPF000465.3E-1594147IPR001356Homeobox domain
PROSITE patternPS000270125148IPR017970Homeobox, conserved site
PROSITE profilePS5084845.603240478IPR002913START domain
SuperFamilySSF559613.98E-32242477No hitNo description
CDDcd088752.16E-97244474No hitNo description
SMARTSM002341.0E-33249475IPR002913START domain
PfamPF018524.8E-40250475IPR002913START domain
SuperFamilySSF559611.33E-8495683No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MYEDHQVAKS GKEGGHMVTN YSDNIFGSAS SSPTGTVQNP DFKLSTFLNP NFSYVIPKEE  60
YGMMSMTENG SAWSGNNPVE DSAIEQQLPP VKKKRLHRHS THQIQEMEAF FKVNPHPNDD  120
DKTRLSEELG LTPLQVKFWF QNRRNQIKIE QDRSDNKMLK AENETLKTEN RKLQFDLQRL  180
SCSSCGGSRD KLHLENYRLR QELDRLHSIA SLMNPCLPPP ETACLFPDMK DNITNNLLIA  240
KEDKAVAMDL AVSCVQELAK MCATNEPLWN KKGSDNEIIS LNEDVYKKMF QWPSVDDNHF  300
RREASRANTV VIMNSITLVN AFLDADKWSE MFCSIVSRAK TIQIISSGVS GASGSLLLMY  360
AELQVPSPLV PTREIYFLRY VKQNAEAGKW MIVDFPVDGL IKPASGITTT DQYRRKPSGF  420
IIQDMSNGYS QITWVEHVEV EEKHVHHEMV REYVESGAAF GAERWLAVLR RQCERMASLM  480
ATNITDLGVI PSVEAKRKLM KLSESMVRTY CLTISNSYGQ ALSESPKETV RITSRKVCGG  540
VVLCGVSTTL LPYSHHQVFD FLRHDHGRSQ MEEMFNENPF QEVAHIANGS HPGNCISLLH  600
FHGASSSNNV EWMLQETCTD NSGSLVVYST VHANAVQLAM SGEDPSRIPL LPLGFSVVPV  660
NQPHVVEGIS VNLDSCLLTV AIQVLVSNAT TATLNLSTTV INNRICSTVY RISSALGSPL  720
LPEIPSSFKQ EISN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:16778018}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126997001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013655964.10.0homeobox-leucine zipper protein HDG4
SwissprotQ8L7H40.0HDG4_ARATH; Homeobox-leucine zipper protein HDG4
TrEMBLM4DWY90.0M4DWY9_BRARP; Uncharacterized protein
STRINGBra021035.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17710.10.0homeodomain GLABROUS 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]