PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126815001
Common NameGSBRNA2T00020469001, GSBRNA2T00020472001, GSBRNA2T00126814001, GSBRNA2T00126815001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 78aa    MW: 8763.1 Da    PI: 10.6745
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126815001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof100.51.1e-312176560
               zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                          + cprC+s+ntkfCyy n slsqPry Ck+C r Wt+G alrn+P+G+g rk k+
  GSBRNA2T00126815001 21 PRICPRCNSDNTKFCYYTNSSLSQPRYICKNCLRLWTHGKALRNIPIGSGGRKTKR 76
                         567**************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-191976IPR003851Zinc finger, Dof-type
PROSITE profilePS5088424.6422276IPR003851Zinc finger, Dof-type
PfamPF027017.3E-282376IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
MNTSHVFVSA NHQVNGEKPP PRICPRCNSD NTKFCYYTNS SLSQPRYICK NCLRLWTHGK  60
ALRNIPIGSG GRKTKRI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.112311e-123seed
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126815001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413832.11e-36dof zinc finger protein DOF4.4
SwissprotQ9SUA94e-30DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A078CGR71e-50A0A078CGR7_BRANA; BnaC03g64450D protein
TrEMBLA0A397YA531e-50A0A397YA53_BRACM; Uncharacterized protein
TrEMBLA0A3P6BKN81e-50A0A3P6BKN8_BRAOL; Uncharacterized protein
TrEMBLM4DWI61e-50M4DWI6_BRARP; Uncharacterized protein
STRINGBra020880.1-P2e-51(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2151225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.11e-32Dof-type zinc finger domain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]