PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126742001
Common NameGSBRNA2T00126742001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 265aa    MW: 30089.3 Da    PI: 5.9852
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126742001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151057148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WTteEd++l++ +   G  +W++ ++  g++R++k+c++rw +yl
  GSBRNA2T00126742001 10 KGPWTTEEDKKLINFILNNGHCCWRALPKLAGLRRCGKSCRLRWTNYL 57
                         79********************************************97 PP
2Myb_DNA-binding51.81.9e-1667107547
                          -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          + eE++l +d+++ +G++ W++Ia++++ gRt++++k++w+++
  GSBRNA2T00126742001  67 SHEEEQLVIDLHAHMGNK-WSKIASRLP-GRTDNEIKNHWNTH 107
                          89****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.577757IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.5E-20856IPR009057Homeodomain-like
SuperFamilySSF466893.31E-269104IPR009057Homeodomain-like
SMARTSM007175.9E-11959IPR001005SANT/Myb domain
PfamPF002497.2E-141057IPR001005SANT/Myb domain
CDDcd001672.89E-81257No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2557113IPR009057Homeodomain-like
PROSITE profilePS5129427.57258112IPR017930Myb domain
SMARTSM007171.6E-1462110IPR001005SANT/Myb domain
PfamPF002498.5E-1566107IPR001005SANT/Myb domain
CDDcd001671.74E-1167108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MGRQPCFVKK GPWTTEEDKK LINFILNNGH CCWRALPKLA GLRRCGKSCR LRWTNYLRPD  60
LRRGLLSHEE EQLVIDLHAH MGNKWSKIAS RLPGRTDNEI KNHWNTHIKK KLVKMGIDPV  120
THQPLNQDPN STDNPKNSCS VSDDISMVTK SSSTKNIETN GTTTEDESIS TITDQNSSMD  180
NDNHQLSNIY NDEELFSYLW SDESTKAETP WSDSNYDVGG TLYHDNNVSC AGADFPICSP  240
ERINGVDWTF QDYCQDFGVH DFGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27101127108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in mature flowers and decreases upon pollination. {ECO:0000269|PubMed:15805488}.
UniprotTISSUE SPECIFICITY: Restricted to the petals, with the highest expression in the limb. {ECO:0000269|PubMed:15805488}.
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126742001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627209.10.0PREDICTED: protein ODORANT1-like isoform X1
RefseqXP_013701026.10.0protein ODORANT1-like
SwissprotQ50EX66e-80ODO1_PETHY; Protein ODORANT1
TrEMBLA0A0D3BL080.0A0A0D3BL08_BRAOL; Uncharacterized protein
STRINGBo3g165540.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22680.11e-141myb domain protein 85
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]