PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00126664001
Common NameGSBRNA2T00126664001, LOC106361020
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 263aa    MW: 29599 Da    PI: 5.1283
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00126664001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.14.9e-18177210134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  GSBRNA2T00126664001 177 CSHCGTNTTPQWRTGPAGPKTLCNACGVRFKSGR 210
                          *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.8E-806262IPR016679Transcription factor, GATA, plant
SMARTSM004017.1E-16171221IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-14174208IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.47E-14174234No hitNo description
PROSITE profilePS5011412.281175207IPR000679Zinc finger, GATA-type
CDDcd002024.39E-16176233No hitNo description
PfamPF003209.0E-16177211IPR000679Zinc finger, GATA-type
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MELWTEARAL KASLRGEAIK HQVIVAEDLS RTSSAEDFSV ECFLDFSEEG QERDEEQLVS  60
VCSSQEEQEQ DYCIFSSQPC IFDQLPSLPD EDVEELEWVS RVVDDCSSPE VSLLFTQTLK  120
TKPSFSSSVP VKPRTKRSRN SLIDDRVWPL VSTNQHATGE QCQKKKQETA VLFQRRCSHC  180
GTNTTPQWRT GPAGPKTLCN ACGVRFKSGR LCPEYRPADS PTFSNEIHSN LHRKVMELRK  240
SKELGEERGE ATTKSDQVKF GS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in roots. Also expressed in stems, flowers and leaves. {ECO:0000269|PubMed:12139008}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00126664001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527710.0AK352771.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-P20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013656170.10.0GATA transcription factor 3
RefseqXP_013656171.10.0GATA transcription factor 3
SwissprotQ8L4M61e-146GATA3_ARATH; GATA transcription factor 3
TrEMBLA0A3P6BEZ50.0A0A3P6BEZ5_BRACM; GATA transcription factor
STRINGBra034644.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-139GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]