PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00126587001 | ||||||||
Common Name | GSBRNA2T00126587001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | GRF | ||||||||
Protein Properties | Length: 410aa MW: 46348.4 Da PI: 8.5623 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.4 | 3e-24 | 143 | 187 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrC+RtDGKkWRCsr+v++ +k+C+rH+hrgr+rsrk++e+ GSBRNA2T00126587001 143 DPEPGRCKRTDGKKWRCSRDVVASYKYCDRHIHRGRNRSRKPVET 187 79****************************************996 PP | |||||||
2 | QLQ | 51.5 | 3.1e-18 | 75 | 110 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 F+ aQ+q+L+ Q+l+y+y++a++ vP+eLl++i+k GSBRNA2T00126587001 75 LFSLAQWQELELQALIYRYMLAGASVPQELLLPIKK 110 59********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.2E-10 | 74 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.515 | 75 | 110 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.5E-13 | 76 | 108 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.504 | 143 | 187 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.6E-21 | 144 | 186 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence Send to blast |
MDLQLKQWRI QQQNESEEQS YATKMSKSFS HQIQSQTATS ATALPLFVPE PTTSSSFSCF 60 SPDSSSSRLL KMGNLFSLAQ WQELELQALI YRYMLAGASV PQELLLPIKK SLFHQSHLNF 120 LHYPLQHNFP HHQPWYWGRG AVDPEPGRCK RTDGKKWRCS RDVVASYKYC DRHIHRGRNR 180 SRKPVETTTN AATNAASSFA LGEKLGQGPD NLFFSSSSSH SSTQHLHLNS HQSCSSEMKQ 240 ESNNKKRPYE AHNNGRTNDG HILRHFFEDW PQSSDSTSRP MSSSTCHHSI SMPSYASSDV 300 SLKLSTCNEE EEANMINNNN NEKEHQQNMN CLSSGGNDYN MDGPLAEALR SASPTSSLLQ 360 QMGISTQIFQ VQFDSVGFLK KLQFSVRFDN RLLQFSSLKN PNRTNQLSN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}. | |||||
Uniprot | TISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00126587001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009148749.1 | 0.0 | PREDICTED: growth-regulating factor 4-like isoform X1 | ||||
Refseq | XP_013721711.1 | 0.0 | growth-regulating factor 4-like | ||||
Swissprot | Q8L8A7 | 1e-154 | GRF4_ARATH; Growth-regulating factor 4 | ||||
TrEMBL | A0A3P6CAI5 | 0.0 | A0A3P6CAI5_BRACM; Uncharacterized protein | ||||
STRING | Bra019640.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1926 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 1e-130 | growth-regulating factor 4 |
Publications ? help Back to Top | |||
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