PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00126371001 | ||||||||
Common Name | GSBRNA2T00126371001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | Dof | ||||||||
Protein Properties | Length: 382aa MW: 42161.9 Da PI: 9.3369 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124 | 4.9e-39 | 119 | 178 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprCdstntkfCy+nny+l+qPr+fCk+CrryWt+GGalrnvPvGgg r+nk+s+ GSBRNA2T00126371001 119 EAALKCPRCDSTNTKFCYFNNYNLTQPRHFCKTCRRYWTRGGALRNVPVGGGFRRNKRSK 178 6789*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-35 | 102 | 171 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.4E-32 | 121 | 176 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.469 | 122 | 176 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 124 | 160 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MDFSSLPVNQ FDSHNWQQVM NLGYCICFLI RLYFAPNIIN LHIFSLYIFF CLRTTFQSQV 60 VSLKSQGNTL QQDRVTSYQN PNFNLPQFSS PPASQAGSSQ ARVNSMVERA RIAKIPLPEA 120 ALKCPRCDST NTKFCYFNNY NLTQPRHFCK TCRRYWTRGG ALRNVPVGGG FRRNKRSKSN 180 GGGRSKSTVV VSADNNNTSS SLSSNPSYSN PSKFLSYGQA PGFTSNLPIL PPFQSHGGYN 240 SSNIGLDFSG IQMSGMSSSG GMLDPWRMSS LQQSQQFPFL SNTSGLDQSS NALYPLLDGN 300 EGLRSKPLMD MEQPRNMKAE ENDQDLDKDG NGVNNLSRNF LGNININPSG NDEYTSWGGN 360 SSINSSWTGF TSNNSTGHLS F* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:10758484}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. {ECO:0000269|PubMed:12887587}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00126371001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). Repressed by jasmonic acid (JA). {ECO:0000269|PubMed:10758484, ECO:0000269|PubMed:12887587}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022566925.1 | 0.0 | dof zinc finger protein DOF3.6-like isoform X1 | ||||
Swissprot | Q9M2U1 | 1e-157 | DOF36_ARATH; Dof zinc finger protein DOF3.6 | ||||
TrEMBL | A0A3P6C9F9 | 0.0 | A0A3P6C9F9_BRACM; Uncharacterized protein | ||||
STRING | Bo4g116790.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1713 | 28 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.3 | 1e-113 | OBF-binding protein 3 |
Publications ? help Back to Top | |||
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