PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00125763001
Common NameGSBRNA2T00125763001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 415aa    MW: 46313.4 Da    PI: 6.1265
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00125763001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS246.31.2e-751764081242
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          +++lL++cA+av+s d+++a + L++++e++s++gd++qRl  +f++AL+ar+++       ++++  ts   +++ l+a+k f++++P+
  GSBRNA2T00125763001 176 MRNLLMQCAQAVASFDQSRAFEKLKEIREHSSSHGDATQRLGYHFANALEARITG-------TMKTPVTS---MVDILKAYKEFVQACPT 255
                          589****************************************************.......44444454...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          l +++ taN++I e +++++++Hi+Df+i +G+QWp+L+qaLa+Rp+gpp+lR+Tg++ p++g   +e++eetg+rL++f++++ vpfe+
  GSBRNA2T00125763001 256 LAMCYYTANRTIFELASKATTLHIVDFGILYGFQWPCLIQALAARPGGPPKLRVTGIELPQPGfrPSERVEETGRRLKRFCDKFSVPFEY 345
                          **************************************************************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                          n+ +ak++++++l+eL +++gE+++Vn++l+l++++de+vsl+s+rd+ Lkl ++++P+++v v
  GSBRNA2T00125763001 346 NF-IAKAWDTITLDELVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLCRDINPDLFVYV 408
                          **.7*********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.96150414IPR005202Transcription factor GRAS
PfamPF035144.3E-73176408IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MDAILQVPVD GFRFDNGSGS CCKPRNNLDS GTSRFTCFKE SESQNLSSPT ESTESHNPSP  60
TESTTVWLYK PQRDLSLNPL HQPTSGFTGS PEISEESTRR YRLRDDDGHE EDDLEGGRKS  120
KLPAISVVDE LAEKLEEVLL VCQKNDHGEA TPNKIGRAKG SLNRSKPQKS DQPVDMRNLL  180
MQCAQAVASF DQSRAFEKLK EIREHSSSHG DATQRLGYHF ANALEARITG TMKTPVTSMV  240
DILKAYKEFV QACPTLAMCY YTANRTIFEL ASKATTLHIV DFGILYGFQW PCLIQALAAR  300
PGGPPKLRVT GIELPQPGFR PSERVEETGR RLKRFCDKFS VPFEYNFIAK AWDTITLDEL  360
VINSGETTVV NCILRLQYTP DETVSLNSPR DTALKLCRDI NPDLFVYVPL LLPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-291804028234GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves, sepals, stamen and pistil, and in the quiescent center of root meristem. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00125763001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527111e-153AK352711.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-05-F16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603044.10.0PREDICTED: scarecrow-like protein 30 isoform X1
RefseqXP_013671999.10.0scarecrow-like protein 30 isoform X1
SwissprotQ9SNB80.0SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A3N6RCL80.0A0A3N6RCL8_BRACR; Uncharacterized protein
STRINGBo1g070830.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36462561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.10.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]