PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00125334001 | ||||||||
Common Name | GSBRNA2T00125334001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C3H | ||||||||
Protein Properties | Length: 424aa MW: 46543.8 Da PI: 6.1361 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.7 | 7.9e-13 | 85 | 108 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e C f++rtG Ck+G++CkF+H+ GSBRNA2T00125334001 85 AEDCAFYMRTGSCKFGSTCKFNHP 108 689********************9 PP | |||||||
2 | zf-CCCH | 29 | 1.9e-09 | 138 | 157 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C++++rtG CkyG +C+F+H GSBRNA2T00125334001 138 CKYYFRTGGCKYGLTCRFNH 157 ******************** PP | |||||||
3 | zf-CCCH | 38.1 | 2.5e-12 | 182 | 205 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f++r+G Ck+G+ CkF H+ GSBRNA2T00125334001 182 EIECPFYMRNGSCKFGADCKFDHP 205 568********************9 PP | |||||||
4 | zf-CCCH | 19.6 | 1.6e-06 | 323 | 348 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++++tG Ck+ +Ck++H++ GSBRNA2T00125334001 323 DQPDCSYYLKTGDCKFKFTCKYHHPK 348 6899********************96 PP | |||||||
5 | zf-CCCH | 35.6 | 1.6e-11 | 369 | 393 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C +++r+G+Ck+G+ C+F H+ GSBRNA2T00125334001 369 DQVICTHYSRYGICKFGPACRFDHS 393 6799********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.272 | 82 | 110 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.6E-7 | 82 | 109 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-6 | 83 | 110 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-10 | 85 | 108 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-5 | 88 | 107 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.915 | 132 | 160 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.27E-5 | 133 | 161 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0079 | 133 | 159 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.3E-7 | 138 | 157 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-5 | 138 | 158 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.629 | 179 | 207 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 179 | 206 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-10 | 182 | 205 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-5 | 183 | 206 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 185 | 204 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.793 | 321 | 349 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.41 | 321 | 348 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.981 | 367 | 395 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-5 | 367 | 394 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.22E-5 | 369 | 394 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 369 | 393 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 372 | 394 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MIGICGSIAR EGLETEPVSR SPSLADGSPS DLNHAADVLS KELKNVGLDE EKMMSVPGGG 60 DDSKEEEDGV SENESEALYP VRPGAEDCAF YMRTGSCKFG STCKFNHPLP NPTNIQIARE 120 SKVREKEEDA DKMRLMDCKY YFRTGGCKYG LTCRFNHTKP NSDVPPSPPE LNFLGLPIRP 180 GEIECPFYMR NGSCKFGADC KFDHPDPTTL GGTDSLSFHG NNGGSIGSFS PKSTFQPSST 240 SWSSPRHANG TAPFIPSMLS QSRGASSQTP EWNGYQATTM YPSERSVFST STTYLMNNSS 300 AETSIFTPYK YQKPAEEFPE RPDQPDCSYY LKTGDCKFKF TCKYHHPKNR LPKQPPFALN 360 DKGLPLRPDQ VICTHYSRYG ICKFGPACRF DHSIQLPDST GSSHVVAEPP QVGANGNESD 420 GWN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Bna.4332 | 0.0 | seed |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00125334001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149817.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 43 | ||||
Swissprot | Q9STM4 | 0.0 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A078F4T2 | 0.0 | A0A078F4T2_BRANA; BnaA06g16540D protein | ||||
STRING | Bra018059.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4176 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 0.0 | C3H family protein |
Publications ? help Back to Top | |||
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