PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00125199001
Common NameGSBRNA2T00125199001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 353aa    MW: 38793.8 Da    PI: 6.0476
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00125199001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06444539
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         +C+ ++e++   +C++++ +lC +C  + H+       H++
  GSBRNA2T00125199001  4 MCDFCGEQRSMVYCRSDSACLCLSCDRSVHSAnalskrHSR 44
                         6*****************************65677777765 PP
2zf-B_box25.92.1e-084691441
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvvp 41
                          +C++++ ++++  C + ++ lC++C  ++H++        H++++
  GSBRNA2T00125199001 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnktlssnnHQRQS 91
                         68*****************************888888888888766 PP
3CCT60.55.7e-21295338144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  GSBRNA2T00125199001 295 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 338
                          99***************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.897147IPR000315B-box-type zinc finger
CDDcd000215.46E-8447No hitNo description
SMARTSM003364.9E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.3144392IPR000315B-box-type zinc finger
CDDcd000211.56E-54776No hitNo description
SMARTSM003360.184892IPR000315B-box-type zinc finger
PROSITE profilePS5101715.338295337IPR010402CCT domain
PfamPF062039.5E-16295337IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD SACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC  60
VEERVSLCQN CDWSGHNNNK TLSSNNHQRQ SISCYSGCPS SSELASIWSF CSDLAGESAC  120
EQEMGMLNID DDGQTKQNCN EDKKDETSSA AQATNASFAK DVGVCEDDFY GNLGMDEVDL  180
ALDNYEELFG TAFNTSVHLF GQGGVDSIFQ KHHQAAPPEG GNLVQPAESN DDSFMSSKTE  240
PIICYTSKPA HSNISFSGVT GESSAGDFQE CGASSSVQLT GEPPWHPQTS QSVTRNNAVM  300
RYKEKKKARK FDKRVRYASR KARADVRRRV KGRFVKAGEA YDYDPLTPTR SY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00125199001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373312e-78AC237331.1 Arabidopsis lyrata clone JGIFAFI-57H17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013622989.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_013622990.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE50.0COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A078F4L40.0A0A078F4L4_BRANA; BnaC03g35440D protein
TrEMBLA0A0D3BA770.0A0A0D3BA77_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B4U70.0A0A3P6B4U7_BRAOL; Uncharacterized protein
STRINGBo3g061400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-180CONSTANS-like 9
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]