PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00125116001
Common NameGSBRNA2T00125116001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 173aa    MW: 19270.8 Da    PI: 4.334
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00125116001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000583254123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y+C+ C + Fs+   L  H++ H
  GSBRNA2T00125116001 32 YTCSFCVRGFSNAQALGGHMNIH 54
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.27E-63058No hitNo description
Gene3DG3DSA:3.30.160.604.4E-43056IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0533259IPR007087Zinc finger, C2H2
PROSITE patternPS0002803454IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MENIKNPKNT DDPDGMSRDS HQSVDNSLPR SYTCSFCVRG FSNAQALGGH MNIHRRDRAN  60
LRQKLMEDNK DDVVAESDSS EVVSLDLNEK QQEDDLARDD DDQDQDQGVD KNIIPGQKLG  120
FWVQENKVDI NADGKVTEVS SIDGSSSSHH LENENLDLEL RLGQRAVETK TT*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Preferentially expressed in roots and flowers. Slightly expressed in leaves and stems. {ECO:0000269|PubMed:15486103}.
Functional Description ? help Back to Top
Source Description
UniProtActivation factor which mediates telomerase activity and potentiates responses to auxin through the regulation of BT2. Binds in vitro to the DNA sequence 5'-GACAGTGTTAC-3' of the BT2 promoter. {ECO:0000269|PubMed:15486103, ECO:0000269|PubMed:17220202}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00125116001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893940.0AC189394.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055G10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627627.11e-124PREDICTED: transcriptional regulator TAC1-like
SwissprotQ9SR341e-78TAC1_ARATH; Transcriptional regulator TAC1
TrEMBLA0A078F3E41e-122A0A078F3E4_BRANA; BnaC03g36070D protein
TrEMBLA0A0D3BAE81e-122A0A0D3BAE8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BAH81e-122A0A3P6BAH8_BRAOL; Uncharacterized protein
STRINGBo3g062110.11e-123(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1423833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-16C2H2 family protein
Publications ? help Back to Top
  1. Ren S,Johnston JS,Shippen DE,McKnight TD
    TELOMERASE ACTIVATOR1 induces telomerase activity and potentiates responses to auxin in Arabidopsis.
    Plant Cell, 2004. 16(11): p. 2910-22
    [PMID:15486103]
  2. Ren S,Mandadi KK,Boedeker AL,Rathore KS,McKnight TD
    Regulation of telomerase in Arabidopsis by BT2, an apparent target of TELOMERASE ACTIVATOR1.
    Plant Cell, 2007. 19(1): p. 23-31
    [PMID:17220202]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]