PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00125105001

Common Name

GSBRNA2T00125105001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB

Protein Properties

Length: 333aa MW: 36447.9 Da PI: 7.9659

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00125105001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.6e-16	14	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +W++eEd l ++v+++G ++W++ ar ++ gRt+k+c++rw + GSBRNA2T00125105001 14 KVAWSAEEDVVLSNLVEKFGARNWSLLARSVP-GRTGKSCRLRWCNQ 59 568***************************.*********985 PP
2	Myb_DNA-binding	49.1	1.3e-15	66	108	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 r+++T+ Ed+ ++ a+ +G++ W+ Ia+ ++ gRt++ +k++w+ GSBRNA2T00125105001 66 RNPFTEVEDQAIITAHGIHGNK-WSVIAKLLP-GRTDNAIKNHWN 108 789*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.438	9	60	IPR017930	Myb domain
SuperFamily	SSF46689	5.99E-30	12	107	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-13	13	62	IPR001005	SANT/Myb domain
Pfam	PF00249	8.7E-15	14	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	8.8E-24	16	67	IPR009057	Homeodomain-like
CDD	cd00167	1.71E-13	16	58	No hit	No description
PROSITE profile	PS51294	24.444	61	115	IPR017930	Myb domain
SMART	SM00717	2.5E-15	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-13	66	108	IPR001005	SANT/Myb domain
CDD	cd00167	8.35E-12	68	111	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-22	68	114	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MAGRSERRGK ERVKVAWSAE EDVVLSNLVE KFGARNWSLL ARSVPGRTGK SCRLRWCNQL 60 DPSLKRNPFT EVEDQAIITA HGIHGNKWSV IAKLLPGRTD NAIKNHWNAT LRRRCMDVEM 120 LTTNNLVPED SGFDRTMNTI AASSEETFSS GGGGHVTTPL VSSDGKEATS MDISEEQCRG 180 NDPPTLFRPV ARLSSFNAYN HMEGSSFSKF QSCKQDAAML RLLEGACNER FVPQKCGSGC 240 CSDSPVDISK QNSLLGPEFV DHLDPPTFPS YELAAIATEI SSLAWLRSGL ESSSVRAMEE 300 AAGRLRPQGS RGHRDHYLAS KQGKSITNVL ST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-35	13	114	6	107	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.24307	0.0	leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00125105001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by salicylic acid. {ECO:0000269\|PubMed:16463103}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189394	0.0	AC189394.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055G10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013625336.1	0.0	PREDICTED: transcription factor MYB44-like
Swissprot	Q42575	1e-170	MYB1_ARATH; Transcription factor MYB1
TrEMBL	A0A078F4A8	0.0	A0A078F4A8_BRANA; BnaC03g36160D protein
STRING	Bo3g062160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8492	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-164	myb domain protein 1

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590] Verma N,Burma PK Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum. Plant J., 2017. 92(3): p. 481-494 [PMID:28849604]