PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00125045001

Common Name

GSBRNA2T00125045001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Nin-like

Protein Properties

Length: 871aa MW: 95779.5 Da PI: 4.8564

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00125045001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.1	3.5e-28	597	647	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek i le+l++yF++++kdAAk++gvc+T+LKriCR++GI RWP+Rkik++ GSBRNA2T00125045001 597 EKIIGLEVLQQYFAGSLKDAAKSIGVCPTTLKRICRHHGITRWPSRKIKKV 647 7889*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	8.7E-4	190	284	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.642	586	667	IPR003035	RWP-RK domain
Pfam	PF02042	2.4E-24	600	647	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.29E-23	762	857	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.3E-22	770	853	No hit	No description
SMART	SM00666	9.9E-28	772	855	IPR000270	PB1 domain
PROSITE profile	PS51745	26.02	772	855	IPR000270	PB1 domain
Pfam	PF00564	8.9E-16	773	854	IPR000270	PB1 domain
CDD	cd06407	3.38E-39	773	854	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MEDDGGSDGG EGNGGFSPNS SFGAFPEMPM DLDLDELFFD GCWLETTDLK QSEETASASN 60 AMNDNTPFLY FAENPFQENV SNEETERTAN QEPLNQAATS SEQAEKFLLE EAEVARRWWI 120 APRGSEGPSS SVKERLLRAI SGLDEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK 180 YSSLAKYRHV SETYNFPADE GSTEVGLPGR VFLQKLPEWT PDVRFFRSEE YPRIKEAQKC 240 DVRGSLAVPV FERGSGTCLG VVEIITTTQK MNYRPELENI CKALEAVDLR SSSNLKTPST 300 EFLQVYNDFY YVALPEISDF LATVCRSYDL PLALSWAPCD RQGKGGSRHS DENFSQCVST 360 IDSACFVLDE QSKCFLEACS EYHLLQGEGM VGKAFKETKL FFVPEVTIFS KTNYALAHHA 420 KVSGLHAALA VPLKSKSNGL VEFVLEFFFP KACIDTEAKQ EMLKSLSVTL QQDFRSSNLV 480 IDKDLELEVV LPDVEDMVLS ESPANGAETE ESLREVHMQD STMTKANEKG KDKKDESKLS 540 SGLDNSQLDS VPNNVPSGAE PGGLRVDAGP STEPASTGGG SMLGSRRPGD KRRSKNEKII 600 GLEVLQQYFA GSLKDAAKSI GVCPTTLKRI CRHHGITRWP SRKIKKVGHS LKKLQVVMDS 660 VQGAQGSLPL DSFYSSFPAL NSPTMSSNGP FLKSKEQLQH LAEDKPAPRS PSSSCSGSST 720 NTANTLQVAE DADAVLKKAH SEPEPHKIIK EPPLLENLAG SSSNKSLRAG GGIKVKATFG 780 EAIIRFTLPP SWGYRELEQE IARRFSIDNV SWFDLKYLDD DKELVLLKCE GDLEECIDIH 840 RSSQSQTIKI SLHDAFQVKL GGSFGSTGAS *

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MEDDGGSDGG EGNGGFSPNS SFGAFPEMPM DLDLDELFFD GCWLETTDLK QSEETASASN  60
AMNDNTPFLY FAENPFQENV SNEETERTAN QEPLNQAATS SEQAEKFLLE EAEVARRWWI  120
APRGSEGPSS SVKERLLRAI SGLDEAVPDK DFLVQIWVPF QQEGKNFLTT LAQPHLFNQK  180
YSSLAKYRHV SETYNFPADE GSTEVGLPGR VFLQKLPEWT PDVRFFRSEE YPRIKEAQKC  240
DVRGSLAVPV FERGSGTCLG VVEIITTTQK MNYRPELENI CKALEAVDLR SSSNLKTPST  300
EFLQVYNDFY YVALPEISDF LATVCRSYDL PLALSWAPCD RQGKGGSRHS DENFSQCVST  360
IDSACFVLDE QSKCFLEACS EYHLLQGEGM VGKAFKETKL FFVPEVTIFS KTNYALAHHA  420
KVSGLHAALA VPLKSKSNGL VEFVLEFFFP KACIDTEAKQ EMLKSLSVTL QQDFRSSNLV  480
IDKDLELEVV LPDVEDMVLS ESPANGAETE ESLREVHMQD STMTKANEKG KDKKDESKLS  540
SGLDNSQLDS VPNNVPSGAE PGGLRVDAGP STEPASTGGG SMLGSRRPGD KRRSKNEKII  600
GLEVLQQYFA GSLKDAAKSI GVCPTTLKRI CRHHGITRWP SRKIKKVGHS LKKLQVVMDS  660
VQGAQGSLPL DSFYSSFPAL NSPTMSSNGP FLKSKEQLQH LAEDKPAPRS PSSSCSGSST  720
NTANTLQVAE DADAVLKKAH SEPEPHKIIK EPPLLENLAG SSSNKSLRAG GGIKVKATFG  780
EAIIRFTLPP SWGYRELEQE IARRFSIDNV SWFDLKYLDD DKELVLLKCE GDLEECIDIH  840
RSSQSQTIKI SLHDAFQVKL GGSFGSTGAS *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.28277	0.0	leaf\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00125045001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013677466.1	0.0	protein NLP1-like
Refseq	XP_013677467.1	0.0	protein NLP1-like
Refseq	XP_013677468.1	0.0	protein NLP1-like
Refseq	XP_013677469.1	0.0	protein NLP1-like
Refseq	XP_022555439.1	0.0	protein NLP1-like
Swissprot	Q8H111	0.0	NLP1_ARATH; Protein NLP1
TrEMBL	A0A078F3A4	0.0	A0A078F3A4_BRANA; BnaC03g47510D protein
STRING	Bo3g092260.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	0.0	Nin-like family protein

Publications ? help Back to Top
Suzuki W,Konishi M,Yanagisawa S The evolutionary events necessary for the emergence of symbiotic nitrogen fixation in legumes may involve a loss of nitrate responsiveness of the NIN transcription factor. Plant Signal Behav, 2014. [PMID:24270631] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]