PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124909001
Common NameGSBRNA2T00124909001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 674aa    MW: 75649.8 Da    PI: 6.9114
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124909001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS374.91e-1142996681374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++lL++cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s    + +l+a++lf  ++P+
  GSBRNA2T00124909001 299 LRSLLIHCAQAVAADDSRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPF 385
                          689***************************************************************9999...999************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                           k+s++++N++I + v ++ rvH+iDf+i +G+QWp+L++ ++    g+p++R+Tg++ p++g   ++++eetgerLa +Ae++gvpfe+
  GSBRNA2T00124909001 386 RKLSYFITNKTIRDLVGNSPRVHVIDFGILYGFQWPTLIHRFSI--YGKPKVRVTGIEFPQPGfrPTQRVEETGERLAAYAEQFGVPFEY 473
                          *******************************************8..8***************9*************************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ +ak++++++le+L+++++E ++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+   +  +n++ F++rf eal ++s++f
  GSBRNA2T00124909001 474 KA-IAKKWDAVQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDAVLSLIGKINPHLFVFGIVNGAYNAPFFVTRFREALFHFSSIF 562
                          **.7************************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          d+le+ +pre+eer+++E e++gre+ nv+aceg er+er et+++W+ r +++G+ +vp++ +++k+  + +++++ + + +++++ +l
  GSBRNA2T00124909001 563 DMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPDIMKTSLRKVNTFYHKDFVIDQDNRWL 652
                          *****************************************************************************888********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          ++gWk+r+++++S+W+
  GSBRNA2T00124909001 653 LQGWKGRTVMALSVWK 668
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.352273648IPR005202Transcription factor GRAS
PfamPF035143.5E-112299668IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MITDPAPVDR TRLPDQPSSL TLFDGYNYSH GLSNNQNAFV TSAAGEEEDP ADEFDFSDAV  60
LGYISQILME EDMDDRVCML QESLDLEAAE RSLYEAIGKK YPPSPERSSP YVENLDHVVP  120
AGDRNGSGGG FMSGGMKPMS GGGFTLDFRN PQSRCSPVLS VPQSPYGVHE SSNASREDQS  180
VWLFRRGVEE GSERNEMIVN FREDSRSKVR RNPNSGEEER CSKLPAVFSE TILRSDVVDK  240
ILVHVPGGES MKEFDALREV LKKGVGKKKA SAPQEGKRRA RGRGRGRGGG GVKKEVVDLR  300
SLLIHCAQAV AADDSRCAGQ LLKQIRQHST PFGDGNQRLA HCFANGLEAR LAGTGSQIYK  360
GIVSKPRSAA AVLKAHQLFL ACCPFRKLSY FITNKTIRDL VGNSPRVHVI DFGILYGFQW  420
PTLIHRFSIY GKPKVRVTGI EFPQPGFRPT QRVEETGERL AAYAEQFGVP FEYKAIAKKW  480
DAVQLEDLDI DRDEITVVNC LYRAENLHDE SVKVESCRDA VLSLIGKINP HLFVFGIVNG  540
AYNAPFFVTR FREALFHFSS IFDMLETIVP REDEERMFLE MEVFGREALN VIACEGWERV  600
ERPETYKQWH VRAMRSGLVQ VPFDPDIMKT SLRKVNTFYH KDFVIDQDNR WLLQGWKGRT  660
VMALSVWKPE SKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-4430567125382Protein SCARECROW
5b3h_A4e-4430567124381Protein SCARECROW
5b3h_D4e-4430567124381Protein SCARECROW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1278287RARGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.267599e-86leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124909001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009133198.10.0PREDICTED: scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A078F3W30.0A0A078F3W3_BRANA; BnaA03g17340D protein
STRINGBra000012.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]