PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124328001
Common NameGSBRNA2T00124328001, LOC106357094
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 354aa    MW: 39208.8 Da    PI: 6.2647
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124328001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-14164210354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  GSBRNA2T00124328001 164 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 210
                          79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11164210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-14165219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-14165220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-12167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.69E-5174213No hitNo description
CDDcd048732.16E-7250318No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MCSKKEVESS GAMNNIQNHP NNLFFHQLVS HHHHQEPSQS ETFRAPGYNV ESGFTIFSQD  60
SVSPIWPTST QPQFDPFTPP TPQASFYGSF FNRSQAHHQG LQFGYEGFGG GTSATHHHQE  120
QLRILAEALG PVVQAGSGPF GLQGELGKMT AQEIMDAKAL AASKSHSEAE RRRRERINNH  180
LAKLRSILPN TTKTDKASLL AEVIQHVKEL KRETSVISET NLVPTESDEL TVAFTEEEET  240
EDGRLVIKAS LCCEDRSDLL PDMIKTLKSM RLKTLKAEIT TAGGRVKNVL FVTGEESSGE  300
DMEDYCIGMI EEALKAVMGK CNVEESSSSV NAKRQRMSSH NTITIIEQQQ YHH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124328001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892910.0AC189291.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB026C23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105020.10.0PREDICTED: transcription factor bHLH30-like
RefseqXP_013652234.10.0transcription factor bHLH30
SwissprotQ9S7Y10.0BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A078F3230.0A0A078F323_BRANA; BnaA07g24430D protein
TrEMBLA0A397YYV20.0A0A397YYV2_BRACM; Uncharacterized protein
TrEMBLM4CII10.0M4CII1_BRARP; Uncharacterized protein
STRINGBra004015.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-171bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  4. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]