PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00124318001
Common NameGSBRNA2T00124318001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MIKC_MADS
Protein Properties Length: 290aa    MW: 33911.6 Da    PI: 7.6305
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00124318001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.1e-313080151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+nrqvtfskRr+g++KKA+E+SvLCdaeva+++fs++gkl+eys+
  GSBRNA2T00124318001 30 KRIENKINRQVTFSKRRAGLMKKAHEISVLCDAEVALVVFSHKGKLFEYST 80
                         79***********************************************96 PP
2K-box1072.2e-35981953100
                K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 
                          +++  + e+  + +++ e+++Lk++ie L+r+qRh+lGedL+ +s keLq+LeqqL+++lk+iRs+Kn+l++++i+elq+kek++qe+n 
  GSBRNA2T00124318001  98 ERQLIAPESDSNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMYDSINELQRKEKAIQEQNS 187
                          5566666677789***************************************************************************** PP

                K-box  93 aLrkklee 100
                          +L+k+++e
  GSBRNA2T00124318001 188 MLSKQIKE 195
                          *****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.8E-402281IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.1272282IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-3423112IPR002100Transcription factor, MADS-box
CDDcd002651.49E-4223100No hitNo description
PROSITE patternPS0035002478IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-302444IPR002100Transcription factor, MADS-box
PfamPF003194.3E-263178IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-304459IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-305980IPR002100Transcription factor, MADS-box
PfamPF014866.5E-30105193IPR002487Transcription factor, K-box
PROSITE profilePS5129716.812109199IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MQSGGDTWDG PVEIVPLKGI KMGRGRVQLK RIENKINRQV TFSKRRAGLM KKAHEISVLC  60
DAEVALVVFS HKGKLFEYST DSCMEKILER YERYSYAERQ LIAPESDSNT NWSMEYNRLK  120
AKIELLERNQ RHYLGEDLQA MSSKELQNLE QQLDTALKHI RSRKNQLMYD SINELQRKEK  180
AIQEQNSMLS KQIKEREKVL RAQQEQWDEQ NHGHNMPPPP PPQQHQIQHP YMLSHQPSPF  240
LNMGYTYVDN FVSYIMGLYQ EEDQMTMRRN DLDLSLEPVY NCNLGCFAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-222295173MEF2 CHIMERA
6byy_B7e-222295173MEF2 CHIMERA
6byy_C7e-222295173MEF2 CHIMERA
6byy_D7e-222295173MEF2 CHIMERA
6bz1_A7e-222295173MEF2 CHIMERA
6bz1_B7e-222295173MEF2 CHIMERA
6bz1_C7e-222295173MEF2 CHIMERA
6bz1_D7e-222295173MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.166590.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00124318001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5058450.0AJ505845.1 Brassica oleracea var. botrytis mRNA for MADS-box protein AP1-a.
GenBankBOU674520.0U67452.1 Brassica oleracea homeotic protein boi2AP1 (Boi2AP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105010.11e-174PREDICTED: floral homeotic protein APETALA 1 A isoform X1
RefseqXP_009105011.11e-174PREDICTED: floral homeotic protein APETALA 1 A isoform X2
SwissprotP0DI141e-174AP1_BRARP; Floral homeotic protein APETALA 1
TrEMBLA0A078F2N80.0A0A078F2N8_BRANA; BnaA07g24360D protein
TrEMBLA0A3P6BJQ40.0A0A3P6BJQ4_BRACM; Uncharacterized protein
STRINGBra004007.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-160MIKC_MADS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]