PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123999001
Common NameGSBRNA2T00123999001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 282aa    MW: 32171.1 Da    PI: 7.9527
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123999001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.41.9e-5551311129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL++kv+++ ++  +++ +vd +k+ePwdLp+k++ +ekewyfF  rd+ky+tg r+nrat++gyWk+tgkdk
  GSBRNA2T00123999001   5 LPPGFRFHPTDEELITHYLCRKVSDTGFTG-KAVVDVDFNKCEPWDLPAKASMGEKEWYFFNLRDRKYPTGLRTNRATEAGYWKTTGKDK 93 
                          79*************************999.88***************999999************************************ PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ +g lvg+kktLvfykgrapkgek++Wvmheyrle
  GSBRNA2T00123999001  94 EIYQ-SGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 131
                          ****.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-633151IPR003441NAC domain
PROSITE profilePS5100559.6575151IPR003441NAC domain
PfamPF023651.0E-286130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEENLPPGFR FHPTDEELIT HYLCRKVSDT GFTGKAVVDV DFNKCEPWDL PAKASMGEKE  60
WYFFNLRDRK YPTGLRTNRA TEAGYWKTTG KDKEIYQSGV LVGMKKTLVF YKGRAPKGEK  120
SNWVMHEYRL ESKQPFKPAK EEWVVCRVFE KSTSAKKPQE QQPQSSFGSP CDASSSMANE  180
FEDIELQNLN SNSSTIDYNH IHQYSQNGVY SQNNTTTSTA RLNMNMATNN IPSWSTTNLL  240
GQPLSPINSL LLRAFQIRNS YININPSPLQ QGEAFNMDSM W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-59415716171NO APICAL MERISTEM PROTEIN
1ut4_B5e-59415716171NO APICAL MERISTEM PROTEIN
1ut7_A5e-59415716171NO APICAL MERISTEM PROTEIN
1ut7_B5e-59415716171NO APICAL MERISTEM PROTEIN
3swm_A6e-59415719174NAC domain-containing protein 19
3swm_B6e-59415719174NAC domain-containing protein 19
3swm_C6e-59415719174NAC domain-containing protein 19
3swm_D6e-59415719174NAC domain-containing protein 19
3swp_A6e-59415719174NAC domain-containing protein 19
3swp_B6e-59415719174NAC domain-containing protein 19
3swp_C6e-59415719174NAC domain-containing protein 19
3swp_D6e-59415719174NAC domain-containing protein 19
4dul_A5e-59415716171NAC domain-containing protein 19
4dul_B5e-59415716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123999001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266587e-90AB026658.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYF24.
GenBankCP0026867e-90CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013656045.10.0NAC domain-containing protein 100-like
SwissprotQ9FLJ21e-81NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3P6BCY60.0A0A3P6BCY6_BRAOL; Uncharacterized protein
STRINGBra001705.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55272649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-166NAC domain containing protein 58
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]