PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123900001
Common NameGSBRNA2T00123900001, LOC106358158
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 301aa    MW: 34927.4 Da    PI: 10.3152
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123900001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-1819111197
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk++ ++d +++++  +p +f++++ +k+  s +++++ ++g sWev +  + +++  y+ ++GW++Fv +n L e++fv+F+++g ++
  GSBRNA2T00123900001  19 FFKIFQSADLFSESMRAMPYNFMKNI-SKEDFSYKMVIRAQWGSSWEVDI--SMNPRFyYMEKSGWNQFVTDNALGENEFVTFTHKGLMR 105
                          99*********************777.466799*****************..999999566669********************988799 PP

                          E..EEEEE CS
                   B3  90 felvvkvf 97 
                          f  +v ++
  GSBRNA2T00123900001 106 F--NVNIY 111
                          8..66665 PP
2B335.71.5e-11207288993
                          HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                           ++ ++ l +pkkf e++  +  esk  ++ +++g  sWev +    ++ r+++++GW + +++  L +gD ++F+l++ +ef l+
  GSBRNA2T00123900001 207 TNSYLKFLAIPKKFEEAYIPD--ESKVYMIHHSEGkGSWEVFC--LVRQTRTIFSSGWCRLAREYPLSVGDRCTFHLVKPDEFVLT 288
                          444556789*****9999433..44344444444449******..8888899*************************998888555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-1713115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1714119IPR015300DNA-binding pseudobarrel domain
CDDcd100175.96E-1518111No hitNo description
PROSITE profilePS5086313.0719114IPR003340B3 DNA binding domain
PfamPF023627.5E-1719110IPR003340B3 DNA binding domain
SMARTSM010198.8E-2119114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-14196288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-17197288IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.912199293IPR003340B3 DNA binding domain
CDDcd100178.25E-11200283No hitNo description
SMARTSM010193.7E-11202293IPR003340B3 DNA binding domain
PfamPF023621.9E-9206290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGWNRGFGRV KDERKNLSFF KIFQSADLFS ESMRAMPYNF MKNISKEDFS YKMVIRAQWG  60
SSWEVDISMN PRFYYMEKSG WNQFVTDNAL GENEFVTFTH KGLMRFNVNI YGKNGKEIVT  120
PRKPHTTTPF SGIKKEEDVK KEDESMGVGV EIEVQKKKRA VEVGESSRGA ALKKKKAEKP  180
KPSKKKKKKM KRKKVKNGVP EFEITITNSY LKFLAIPKKF EEAYIPDESK VYMIHHSEGK  240
GSWEVFCLVR QTRTIFSSGW CRLAREYPLS VGDRCTFHLV KPDEFVLTTK KAREEITVIE  300
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173193KKKAEKPKPSKKKKKKMKRKK
2183191KKKKKKMKR
3184193KKKKKMKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123900001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893481e-76AC189348.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042O03, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653362.10.0B3 domain-containing protein At3g17010
SwissprotQ9LSP61e-106Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A3N6Q5590.0A0A3N6Q559_BRACR; Uncharacterized protein
STRINGBra001648.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.14e-98B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]