PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123899001
Common NameGSBRNA2T00123899001, LOC106358159
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 286aa    MW: 32883.8 Da    PI: 10.1028
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123899001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.33.8e-2019113199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk++ ++d +++++  +p +f+ ++ +k+  s ++++++++grsWev +  + +++  y+ ++GW++Fv++n L +++fv+F+++g ++
  GSBRNA2T00123899001  19 FFKIFYSADLSSESMRGIPYDFM-KNVSKEDFSCKMVIRTKWGRSWEVDI--SMNPRFyYMEKSGWNQFVSDNALGSNEFVTFTHSGLMC 105
                          99*********************.6656778999****************..999999566669********************998899 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          f  +v ++r+
  GSBRNA2T00123899001 106 F--NVNIYRE 113
                          9..8888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-1914115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-1815119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-1518112No hitNo description
PROSITE profilePS5086313.54919114IPR003340B3 DNA binding domain
PfamPF023623.4E-1819113IPR003340B3 DNA binding domain
SMARTSM010191.8E-2319114IPR003340B3 DNA binding domain
SuperFamilySSF1019368.44E-13182272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-9184273IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.418184277IPR003340B3 DNA binding domain
SMARTSM010197.3E-4187277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MEWNRGFGRV KEERKSLSFF KIFYSADLSS ESMRGIPYDF MKNVSKEDFS CKMVIRTKWG  60
RSWEVDISMN PRFYYMEKSG WNQFVSDNAL GSNEFVTFTH SGLMCFNVNI YRESGKEIVL  120
PHATTPFSGI KNEEGERSYK DVKKEDESMG GVGHVEIGES SRGAALRKKK AEKHKRRKKV  180
KYGVPRFKIT ITKSYLKSLP IPTFFDKYLK SESKVYKIHH SEGDGSWEVL SLVHQAHIVL  240
SRGWIKLARE YPLAVGDRCT FHLVKPTEFV LTSKKAKAIE ISISD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123899001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653363.10.0B3 domain-containing protein At3g17010
SwissprotQ9LSP65e-93Y3701_ARATH; B3 domain-containing protein At3g17010
TrEMBLA0A0D3BBP80.0A0A0D3BBP8_BRAOL; Uncharacterized protein
TrEMBLA0A3P6B7C90.0A0A3P6B7C9_BRAOL; Uncharacterized protein
STRINGBo3g068590.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G17010.11e-91B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]