PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123687001
Common NameGSBRNA2T00123687001, LOC106380662, LOC106390441
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 349aa    MW: 39066.3 Da    PI: 4.6472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123687001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18111160255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r ++ +g+W+AeIrdp++     r +lg+f taeeAa+a++aa+++++g
  GSBRNA2T00123687001 111 QYRGIRLRP-WGKWAAEIRDPKK---GSREWLGTFETAEEAARAYDAAARRIRG 160
                          69*******.**********954...39************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.881111168IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-21111169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-31111169IPR001471AP2/ERF domain
SMARTSM003803.0E-36111174IPR001471AP2/ERF domain
CDDcd000181.39E-15111169No hitNo description
PRINTSPR003671.5E-10112123IPR001471AP2/ERF domain
PfamPF008471.6E-11112160IPR001471AP2/ERF domain
PRINTSPR003671.5E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MCGGAIISEF IPPPNSRRVT SEFIWPDLKN LKKKKSRKRS DFLDLDDEFE ADFKGFKDDD  60
SSFDCEDGFD VKPFAFTAAS LPTNVASTGS VSGKKTIESD EKSGKRKRKN QYRGIRLRPW  120
GKWAAEIRDP KKGSREWLGT FETAEEAARA YDAAARRIRG GKAKVNFPEE VISNLKKPVA  180
KPNHTPALVQ PPTHVGQYCN NNSFDNMGHD SLSFIEEKPQ MYNNQFFDVG QYFSSDQGSN  240
SFDCSEFGWS DHAPKTPPEI SSMLVNNNRA TFDEETNAAK KVKLNSEDET SDNDDLMAYL  300
DNALWESPLE MEAMLGVDVA ADGVAQKEAN PMELWSLDDI NFMLDGDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21111171263ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.37900.0flower| leaf| microspore-derived embryo| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Constitutive in flowers, leaves, stems, and roots. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:9192694}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in carotenoid biosynthesis regulation. Binds to the 5'-ATCTA-3' element present in the promoter of phytoene synthase (PSY) and phytoene desaturase (PDS). Involved in ethylene response and resistance to necrotrophic pathogens. Acts as a downstream regulator in the ethylene signaling pathway. Partially redundant with RAP2-12. {ECO:0000269|PubMed:17873090, ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123687001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by darkness, ethylene and Botrytis cinerea. {ECO:0000269|PubMed:20357136, ECO:0000269|PubMed:22530619}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892530.0AC189253.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB019N06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013675916.10.0ethylene-responsive transcription factor RAP2-2-like
RefseqXP_013686342.10.0ethylene-responsive transcription factor RAP2-2-like
SwissprotQ9LUM41e-146RAP22_ARATH; Ethylene-responsive transcription factor RAP2-2
TrEMBLA0A0D3BB890.0A0A0D3BB89_BRAOL; Uncharacterized protein
STRINGBo3g066010.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-130related to AP2 2
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  4. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  5. Yao Y, et al.
    ETHYLENE RESPONSE FACTOR 74 (ERF74) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1667-1681
    [PMID:28164334]
  6. Giuntoli B, et al.
    Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana.
    Plant Cell Environ., 2017. 40(10): p. 2333-2346
    [PMID:28741696]