PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00123575001 | ||||||||
Common Name | GSBRNA2T00123575001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | bHLH | ||||||||
Protein Properties | Length: 543aa MW: 61500.2 Da PI: 5.6715 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.7 | 2.6e-05 | 369 | 402 | 17 | 55 |
HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 N++f+ L+ ++P+ + ++K eiL +++Y+++L+ GSBRNA2T00123575001 369 NEKFSVLKAMVPTvN------QVDKEEILNNTIKYLQELE 402 9************66......7***************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.8E-50 | 19 | 217 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 10.709 | 352 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-7 | 358 | 407 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-8 | 367 | 416 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-8 | 369 | 412 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MAGGVEAASG RNKRKNNLLR KQLAVALRSV QWSYAIFWSS SLTQPGVLEW EEGCYNGDIK 60 KRKKSYEAAH YKYALQRSNQ LRKLYLCMLE GDSNTTISTT HDVDDYGDDE EHNCNSATSM 120 MLSPDDLSDE EWYYIVSMSY VFSPSQCLPG RALVTGETIW LCNAQYADNK LFSRSLLARS 180 ASIQTVVCFP YLGGVIELGV TELISEDHSL LQHIKSCLLE TSKPDCASYN FSARQASDDE 240 KNQTKIKTSD GNSNSVLQEN HQIQSDEDVH YKRTVSTLVK YSADKDIHHL QPDLVSSNVG 300 SSFLRWKQRE QPNSILFQEH SNLQTLSQNV LRKILQEVPL MHSLDTKRTL PSKTLGLNQD 360 DPWDTRKENE KFSVLKAMVP TVNQVDKEEI LNNTIKYLQE LEERVEELES CMGSVNFVER 420 QRKSVNDSVL IEETSGNYDD STKIDGNSGE TEQVTIARDE THLRVKLKET EVVMEVRCSY 480 RDYIVADIME ALSKLHMDAF SVRSYTLNGF LTLNLKAKFR GAAVASVGMI KRELRRAIGE 540 II* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 8e-12 | 19 | 218 | 9 | 192 | Transcription factor MYC3 |
4rqw_B | 8e-12 | 19 | 218 | 9 | 192 | Transcription factor MYC3 |
4rs9_A | 8e-12 | 19 | 218 | 9 | 192 | Transcription factor MYC3 |
4yz6_A | 8e-12 | 19 | 218 | 9 | 192 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 63 | KKRKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in developing seeds. Also detected in stems and leaves. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:8980509}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00123575001 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013608988.1 | 0.0 | PREDICTED: transcription factor MYC1 | ||||
Refseq | XP_013608989.1 | 0.0 | PREDICTED: transcription factor MYC1 | ||||
Swissprot | Q8W2F1 | 0.0 | BH012_ARATH; Transcription factor MYC1 | ||||
TrEMBL | A0A0D3DZM9 | 0.0 | A0A0D3DZM9_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g002370.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11770 | 18 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00480.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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