PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123560001
Common NameGSBRNA2T00123560001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 789aa    MW: 86367.4 Da    PI: 6.2134
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123560001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.7e-21124179156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  GSBRNA2T00123560001 124 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 179
                          688999***********************************************999 PP
2START198.92.2e-623095282206
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                          la++a++el+k+a+++ep+Wvks     +++n +e++++f+++k     +ea+r+sg+v+ ++  lve+l+d+  +W+e+++    + +t
  GSBRNA2T00123560001 309 LALTAMDELLKLAQSDEPLWVKSLdgerDELNHEEYMRTFSSTKPngLVTEASRTSGMVIINSLALVEKLMDSD-RWTEMFPcivaRSTT 397
                          6899************************************99999999**************************.*************** PP

                          EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEE CS
                START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghsk 163
                          ++vis g      ga+qlm+aelq+lsplv  R++ f+R+++q+ +g+w++vdvS+d  ++++  s  v+R  +lpSg++++++sng+sk
  GSBRNA2T00123560001 398 TDVISGGmagtrnGAIQLMNAELQVLSPLVRvRNVNFLRFCKQHAEGVWAVVDVSIDTVRENSGgSTVVIR--RLPSGCVVQDMSNGYSK 485
                          ***************************************************************76666666..***************** PP

                          EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          vtwveh++++++++h l+r+l++sgl +g ++wvatlqrqce+
  GSBRNA2T00123560001 486 VTWVEHAEYDENQIHHLYRPLLRSGLCFGSQRWVATLQRQCEC 528
                          *****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-20111181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-22111181IPR009057Homeodomain-like
PROSITE profilePS5007117.281121181IPR001356Homeobox domain
SMARTSM003899.9E-18122185IPR001356Homeobox domain
CDDcd000861.45E-18124181No hitNo description
PfamPF000462.0E-18124179IPR001356Homeobox domain
PROSITE patternPS000270156179IPR017970Homeobox, conserved site
PROSITE profilePS5084843.348299531IPR002913START domain
SuperFamilySSF559613.74E-30303528No hitNo description
CDDcd088753.41E-111303527No hitNo description
SMARTSM002341.1E-36308528IPR002913START domain
PfamPF018522.0E-55309528IPR002913START domain
SuperFamilySSF559611.65E-21548761No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 789 aa     Download sequence    Send to blast
MNFGSLFDNT TGGVPTGLAY GNHTTASTVI PGGAMSHIAA ASLFSPPINT KSIYSSSGLS  60
LALEQPERGT SMRNNNGAGG DIFDGSGKNR RSREEEHESR SGSDNVEGIS GEDQDADDNK  120
PPKKKRYHRH TPQQIQELES MFKECPHPDE KQRLELSKRL CLETRQVKFW FQNRRTQMKT  180
QLERHENALL RQENDKLRAE NMSIREAMRN PTCNICGGPA MLGDVSIEEH HLRVENARLK  240
DELDRVFNLT GKFLGHHHNN HTSSLELGVG TNNNGGNFAF PPDFNGGLPP PQQATVINGV  300
DQRSVLLDLA LTAMDELLKL AQSDEPLWVK SLDGERDELN HEEYMRTFSS TKPNGLVTEA  360
SRTSGMVIIN SLALVEKLMD SDRWTEMFPC IVARSTTTDV ISGGMAGTRN GAIQLMNAEL  420
QVLSPLVRVR NVNFLRFCKQ HAEGVWAVVD VSIDTVRENS GGSTVVIRRL PSGCVVQDMS  480
NGYSKVTWVE HAEYDENQIH HLYRPLLRSG LCFGSQRWVA TLQRQCECLA ILMSSSVTSH  540
DDTSISPGGR KSMLKLAQRM TINFCSGISA PSVHSWSKLT VGNVDPDVRI MTRKSVDDPS  600
EAPGIVLSAA TSVWLPASPQ RLFDFLRNER MRCEWDILSN GGPMQEMAHI AKGQDQGNSV  660
SLLRSNPMNA NQSSMLILQE TCIDASGALV VYAPVDIPAM HVVMNGGDSS YVALLPSGFA  720
VLPDGGFDGV SGDGEQRPVG GGSLLTVAFQ ILVNNLPTAK LTVESVETVN SLISCTVQKI  780
RTALQCEN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.66500.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123560001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013612299.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A3P6D9390.0A0A3P6D939_BRAOL; Uncharacterized protein
STRINGBo9g002480.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]