PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00123534001
Common NameGSBRNA2T00123534001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 364aa    MW: 39311.3 Da    PI: 7.0356
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00123534001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.46.4e-23245307163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          eke+kre+rkq+NRe+ArrsR+RK+ae+eeL  kv++L aeN++L+++l +l++e++kl+ e+
  GSBRNA2T00123534001 245 EKEVKREKRKQSNRESARRSRLRKQAETEELSVKVDALVAENMTLRSKLGQLNDESEKLRLEN 307
                          89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.9E-24194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165968.8E-14129204No hitNo description
Gene3DG3DSA:1.20.5.1703.5E-16240304No hitNo description
SMARTSM003388.5E-20245309IPR004827Basic-leucine zipper domain
PfamPF001701.0E-21245307IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.76247310IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-10248304No hitNo description
CDDcd147025.69E-20250299No hitNo description
PROSITE patternPS000360252267IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGSNEEGKTT QSDKPAQVQA PPPPEQSNVH VYHHDWAAMQ AYYGPRGAIT PQYYNSNGHA  60
PPYIWGSPSP MMAPYGTPYP PFCPPGGVYA HPALQMGTQP QGAVSQATPV VATPLNLEAH  120
PANSSGNTDQ GFMKKLKEFD GLAMSISNNK TGSAEHSSEP KNSQSSENDD SSNGSDGNTT  180
GGEQSRKKRS REGSPNNDGK PSSQIVPLLR DENEKQAVTM GTPVMPTVLD FPQPRHGAPH  240
EVWNEKEVKR EKRKQSNRES ARRSRLRKQA ETEELSVKVD ALVAENMTLR SKLGQLNDES  300
EKLRLENQAL LDQLKAQATG KTENLISGVD KNNNSVSGSS SSSKNAEQQL LNVSLRTDSV  360
AAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261267RRSRLRK
2261268RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.21160.0root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves. {ECO:0000269|PubMed:1373374}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. GBF2 is found to bind asymmetrically to the G-box. {ECO:0000269|PubMed:1373374}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00123534001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX839200.0X83920.1 B.napus mRNA for G-Box binding factor 2A.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013611854.10.0PREDICTED: G-box-binding factor 2 isoform X2
RefseqXP_013611855.10.0PREDICTED: G-box-binding factor 2 isoform X2
SwissprotP427751e-168GBF2_ARATH; G-box-binding factor 2
TrEMBLA0A3P6DV310.0A0A3P6DV31_BRAOL; Uncharacterized protein
STRINGBo9g003700.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35712661
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01120.11e-127G-box binding factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Li B, et al.
    Promoter-based integration in plant defense regulation.
    Plant Physiol., 2014. 166(4): p. 1803-20
    [PMID:25352272]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]